HL_7MQ8_012

3D structure

PDB id

7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7MQ8|1|L1|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MQ8_012 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.1246

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7MQ8|1|L1|C|462
7MQ8|1|L1|C|463
7MQ8|1|L1|A|464
7MQ8|1|L1|A|465
7MQ8|1|L1|G|466
7MQ8|1|L1|G|467

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L6

40S ribosomal protein S6

Chain NJ

RNA cytidine acetyltransferase

Chain SI

Ribosome biogenesis protein BMS1 homolog