HL_7MQ8_015

3D structure

PDB id

7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MQ8_015 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1738

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7MQ8|1|L1|A|569
7MQ8|1|L1|C|570
7MQ8|1|L1|U|571
7MQ8|1|L1|U|572
7MQ8|1|L1|U|573
7MQ8|1|L1|A|574
7MQ8|1|L1|A|575
7MQ8|1|L1|A|576
7MQ8|1|L1|U|577
7MQ8|1|L1|C|578
7MQ8|1|L1|C|579
7MQ8|1|L1|U|580
7MQ8|1|L1|U|581

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L9

40S ribosomal protein S9

Chain LF

40S ribosomal protein S24

Chain NC

Neuroguidin

Chain SI

Ribosome biogenesis protein BMS1 homolog