HL_7MQ8_028

3D structure

PDB id

7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGAAC

Length

6 nucleotides

Bulged bases

7MQ8|1|L1|U|1848, 7MQ8|1|L1|G|1849, 7MQ8|1|L1|A|1851

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MQ8_028 not in the Motif Atlas

Geometric match to HL_6AAX_001

Geometric discrepancy: 0.34

The information below is about HL_6AAX_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

7MQ8|1|L1|G|1847
7MQ8|1|L1|U|1848
7MQ8|1|L1|G|1849
7MQ8|1|L1|A|1850
7MQ8|1|L1|A|1851
7MQ8|1|L1|C|1852

Current chains

Chain L1

18S rRNA

Nearby chains

Chain LR

Transducin beta-like protein 3

Chain NG

40S ribosomal protein S14

Chain NY

KRR1 small subunit processome component homolog