HL_7MQ8_032

3D structure

PDB id

7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAAAG

Length

6 nucleotides

Bulged bases

7MQ8|1|L1|U|1193, 7MQ8|1|L1|A|1195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MQ8_032 not in the Motif Atlas

Geometric match to HL_8VMB_002

Geometric discrepancy: 0.2218

The information below is about HL_8VMB_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7MQ8|1|L1|U|1192
7MQ8|1|L1|U|1193
7MQ8|1|L1|A|1194
7MQ8|1|L1|A|1195
7MQ8|1|L1|A|1196
7MQ8|1|L1|G|1197

Current chains

Chain L1

18S rRNA

Nearby chains

Chain LQ

WD repeat-containing protein 3

Chain NA

U3 small nucleolar ribonucleoprotein protein MPP10

Chain SM

U3 small nucleolar ribonucleoprotein protein IMP4