HL_7MQ9_016
3D structure
- PDB id
- 7MQ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state pre-A1*
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.87 Å
Loop
- Sequence
- GGUGCC
- Length
- 6 nucleotides
- Bulged bases
- 7MQ9|1|L1|U|612, 7MQ9|1|L1|G|613, 7MQ9|1|L1|C|614
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MQ9_016 not in the Motif Atlas
- Geometric match to HL_2Y9H_003
- Geometric discrepancy: 0.1886
- The information below is about HL_2Y9H_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.8
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 23
Unit IDs
7MQ9|1|L1|G|610
7MQ9|1|L1|G|611
7MQ9|1|L1|U|612
7MQ9|1|L1|G|613
7MQ9|1|L1|C|614
7MQ9|1|L1|C|615
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain SI
- Ribosome biogenesis protein BMS1 homolog
- Chain SM
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain SR
- 40S ribosomal protein S23
- Chain ST
- Nucleolar protein 14
- Chain SY
- Probable U3 small nucleolar RNA-associated protein 11
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