RNA 3D Hub //

7MQ9 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7MQ9_0011/L0/678:685No text annotation
HL_7MQ9_0061/L1/69:80No text annotation
geometric
HL_361D_002
NA
HL_7MQ9_0321/L1/156:162GNRA related
homologous
HL_8C3A_194
NA
HL_7MQ9_0091/L1/377:387No text annotation
HL_7MQ9_0341/L1/442:451No text annotation
HL_7MQ9_0121/L1/462:467UNCG
homologous
HL_4V88_196
NA
HL_7MQ9_0131/L1/498:504No text annotation
homologous
HL_4V88_197
NA
HL_7MQ9_0141/L1/539:544No text annotation
homologous
HL_4V88_198
NA
HL_7MQ9_0151/L1/569:581No text annotation
homologous
HL_4V88_199
NA
HL_7MQ9_0161/L1/610:615No text annotation
geometric
HL_2Y9H_003
HL_75660.8
HL_7MQ9_0181/L1/957:966No text annotation
homologous
HL_4V88_206
NA
HL_7MQ9_0191/L1/994:999GNRA
homologous
HL_4V88_207
NA
HL_7MQ9_0201/L1/1112:1121No text annotation
geometric
HL_5TBW_006
NA
HL_7MQ9_0211/L1/1192:1197Mini UNCG
geometric
HL_2F8K_001
HL_90436.3
HL_7MQ9_0271/L1/1658:1666No text annotation

Problematic loops

#loop idProblemSequence
HL_7MQ9_002No text annotation
HL_7MQ9_003No text annotation
HL_7MQ9_004No text annotation
HL_7MQ9_005No text annotation
HL_7MQ9_007No text annotation
HL_7MQ9_008Mini UNCG
HL_7MQ9_010No text annotation
HL_7MQ9_011No text annotation
HL_7MQ9_017No text annotation
HL_7MQ9_022Anticodon loop related
HL_7MQ9_023GNRA
HL_7MQ9_024No text annotation
HL_7MQ9_025GNRA
HL_7MQ9_026No text annotation
HL_7MQ9_033No text annotation
HL_7MQ9_028No text annotation
HL_7MQ9_029Mini UNCG
HL_7MQ9_030No text annotation
HL_7MQ9_031No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7MQ9_0011/L0/451:453,
1/L0/670:671		No text annotation
IL_7MQ9_0031/L0/676:677,
1/L0/686:688		No text annotation
IL_7MQ9_0071/L0/760:761,
1/L0/797:800		No text annotation
IL_7MQ9_0081/L0/817:819,
1/L2/71:72		No text annotation
IL_7MQ9_0091/L0/1415:1417,
1/L2/52:54		No text annotation
IL_7MQ9_0101/L0/1417:1419,
1/L2/50:52		No text annotation
IL_7MQ9_0111/L0/1420:1422,
1/L2/47:49		No text annotation
IL_7MQ9_0121/L1/23:25,
1/L1/649:651		Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_7MQ9_0131/L1/34:36,
1/L1/519:521		Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_7MQ9_0141/L1/37:40,
1/L1/514:518		No text annotation
IL_7MQ9_0151/L1/57:62,
1/L1/86:88		No text annotation
homologous
IL_4V88_389
NA
IL_7MQ9_0161/L1/63:68,
1/L1/81:85		No text annotation
homologous
IL_4V88_390
NA
IL_7MQ9_0181/L1/110:112,
1/L1/349:351		Isolated non-canonical cWW pair
geometric
IL_4WF9_042
IL_01003.4
IL_7MQ9_0891/L1/110:115,
1/L1/348:351		Tandem non-canonical cWW pairs
homologous
IL_8P9A_380
IL_71194.2
IL_7MQ9_0191/L1/112:115,
1/L1/348:349		Multiple bulged bases
geometric
IL_5W1H_001
IL_71421.3
IL_7MQ9_0201/L1/116:121,
1/L1/343:347		No text annotation
homologous
IL_4V88_393
NA
IL_7MQ9_0211/L1/145:151,
1/L1/167:174		tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_7MQ9_0221/L1/152:154,
1/L1/164:166		Isolated cWH basepair
geometric
IL_3R1C_032
NA
IL_7MQ9_0241/L1/216:219,
1/L1/302:309		Tandem non-canonical cWW pairs
geometric
IL_1GID_008
NA
IL_7MQ9_0311/L1/312:314,
1/L1/336:337		Single bulged A
homologous
IL_4V88_399
NA
IL_7MQ9_0321/L1/317:319,
1/L1/332:333		Single stack bend
geometric
IL_5TBW_009
NA
IL_7MQ9_0351/L1/366:371,
1/L1/393:394		No text annotation
geometric
IL_5Y58_001
IL_37738.1
IL_7MQ9_0371/L1/437:439,
1/L1/454:456		Isolated non-canonical cWW pair
geometric
IL_5TBW_127
NA
IL_7MQ9_0381/L1/459:461,
1/L1/468:470		Isolated near basepair
homologous
IL_4V88_406
NA
IL_7MQ9_0391/L1/491:495,
1/L1/508:509		C-loop
geometric
IL_5J7L_018
NA
IL_7MQ9_0401/L1/495:496,
1/L1/506:508		Single bulged G
geometric
IL_5J7L_019
NA
IL_7MQ9_0411/L1/530:531,
1/L1/553:555		Single bulged A
homologous
IL_4V88_409
NA
IL_7MQ9_0421/L1/534:535,
1/L1/548:550		No text annotation
IL_7MQ9_0431/L1/535:537,
1/L1/546:548		Isolated non-canonical cWW pair
geometric
IL_3MEI_002
IL_01003.4
IL_7MQ9_0441/L1/563:565,
1/L1/585:592		Isolated tHS basepair with bulges
geometric
IL_7RQB_082
NA
IL_7MQ9_0451/L1/566:569,
1/L1/581:584		Tandem non-canonical cWW pairs
geometric
IL_402D_001
NA
IL_7MQ9_0471/L1/673:675,
1/L1/1030:1032		Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_7MQ9_0481/L1/676:680,
1/L1/1025:1029		tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_7MQ9_0491/L1/922:923,
1/L1/1019:1022		Major groove platform; stack outside cWW
homologous
IL_4V88_428
NA
IL_7MQ9_0911/L1/925:926,
1/L1/1015:1017		Single bulged U
geometric
IL_2PJP_001
IL_97561.5
IL_7MQ9_0511/L1/927:931,
1/L1/1010:1014		No text annotation
geometric
IL_5TBW_121
NA
IL_7MQ9_0521/L1/931:935,
1/L1/1007:1010		Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_7MQ9_0531/L1/942:945,
1/L1/981:984		Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_7MQ9_0541/L1/952:956,
1/L1/967:974		Kink-turn
homologous
IL_4V88_434
NA
IL_7MQ9_0551/L1/1092:1096,
1/L1/1136:1139		No text annotation
geometric
IL_2OE8_002
IL_34618.2
IL_7MQ9_0561/L1/1098:1101,
1/L1/1131:1134		Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_7MQ9_0571/L1/1101:1103,
1/L1/1129:1131		Isolated non-canonical cWW pair
geometric
IL_4WF9_083
IL_01003.4
IL_7MQ9_0581/L1/1108:1110,
1/L1/1123:1124		Minor groove platform
geometric
IL_4V88_412
NA
IL_7MQ9_0601/L1/1214:1217,
1/L1/1681:1685		C-loop
homologous
IL_4V88_443
NA
IL_7MQ9_0611/L1/1230:1232,
1/L1/1526:1528		Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_7MQ9_0731/L1/1714:1716,
1/L1/1817:1819		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_7MQ9_0741/L1/1717:1720,
1/L1/1813:1816		Tandem non-canonical cWW pairs
geometric
IL_5LQO_002
IL_15225.2
IL_7MQ9_0941/L1/1717:1722,
1/L1/1812:1816		No text annotation
IL_7MQ9_0961/L2/79:85,
1/L2/210:213		No text annotation
IL_7MQ9_1011/L2/86:95,
1/L2/204:209		No text annotation
IL_7MQ9_0821/L2/110:114,
1/L2/158:165		No text annotation
IL_7MQ9_0831/L2/114:118,
1/L2/155:158		No text annotation

Problematic loops

#loop idProblemSequence
IL_7MQ9_002No text annotation
IL_7MQ9_004No text annotation
IL_7MQ9_088No text annotation
IL_7MQ9_099No text annotation
IL_7MQ9_100No text annotation
IL_7MQ9_005No text annotation
IL_7MQ9_006No text annotation
IL_7MQ9_017Isolated non-canonical cWW pair
IL_7MQ9_023Double sheared with non-canonical cWW
IL_7MQ9_025No text annotation
IL_7MQ9_026Tandem non-canonical cWW pairs
IL_7MQ9_027Minor groove platform related
IL_7MQ9_028Isolated non-canonical cWW pair
IL_7MQ9_029No text annotation
IL_7MQ9_030No text annotation
IL_7MQ9_090No text annotation
IL_7MQ9_033Single bulged U
IL_7MQ9_034Kink-turn with non-sequential stacking
IL_7MQ9_036Single bulged C
IL_7MQ9_046No text annotation
IL_7MQ9_050Tandem non-canonical cWW pairs
IL_7MQ9_059Multiple bulged bases
IL_7MQ9_062Isolated non-canonical cWW pair
IL_7MQ9_063No text annotation
IL_7MQ9_092No text annotation
IL_7MQ9_064No text annotation
IL_7MQ9_065No text annotation
IL_7MQ9_066No text annotation
IL_7MQ9_067Single bulged U
IL_7MQ9_068Single bulged A
IL_7MQ9_069Isolated cWH basepair
IL_7MQ9_070Tandem non-canonical cWW pairs
IL_7MQ9_071No text annotation
IL_7MQ9_072Isolated non-canonical cWW pair
IL_7MQ9_093No text annotation
IL_7MQ9_075Single stack bend
IL_7MQ9_076Isolated non-canonical cWW pair
IL_7MQ9_077Double sheared
IL_7MQ9_078Isolated non-canonical cWW pair
IL_7MQ9_079Triple sheared
IL_7MQ9_095No text annotation
IL_7MQ9_080No text annotation
IL_7MQ9_081No text annotation
IL_7MQ9_097No text annotation
IL_7MQ9_084No text annotation
IL_7MQ9_098No text annotation
IL_7MQ9_085No text annotation
IL_7MQ9_086No text annotation
IL_7MQ9_087No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7MQ9_0121/L1/682:684,
1/L1/918:922,
1/L1/1022:1023		No text annotation
geometric
J3_8P9A_071
J3_01633.1
J3_7MQ9_0131/L1/682:684,
1/L1/918:923,
1/L1/1019:1023		No text annotation
homologous
J3_8P9A_072
J3_17385.5
J3_7MQ9_0021/L1/938:941,
1/L1/985:993,
1/L1/1000:1004		No text annotation
homologous
J3_4V88_033
NA
J3_7MQ9_0111/L1/1218:1221,
1/L1/1645:1651,
1/L1/1673:1680		No text annotation
homologous
J3_8C3A_038
NA
J3_7MQ9_0031/L1/1225:1228,
1/L1/1530:1532,
1/L1/1638:1641		No text annotation
homologous
J3_8C3A_039
NA
J3_7MQ9_0071/L2/105:110,
1/L2/165:168,
1/L2/193:194		No text annotation
J5_7MQ9_0011/L1/30:36,
1/L1/519:527,
1/L1/558:563,
1/L1/592:595,
1/L1/641:644		No text annotation
J5_7MQ9_0021/L1/30:36,
1/L1/519:527,
1/L1/558:565,
1/L1/585:595,
1/L1/641:644		No text annotation

Problematic loops

#loop idProblemSequence
J3_7MQ9_008No text annotation
J3_7MQ9_001No text annotation
J3_7MQ9_009No text annotation
J3_7MQ9_010No text annotation
J3_7MQ9_004No text annotation
J3_7MQ9_005No text annotation
J3_7MQ9_006No text annotation

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