HL_7MQ9_033
3D structure
- PDB id
- 7MQ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state pre-A1*
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.87 Å
Loop
- Sequence
- GGUCAUAAGCU
- Length
- 11 nucleotides
- Bulged bases
- 7MQ9|1|L1|U|1659, 7MQ9|1|L1|C|1660, 7MQ9|1|L1|G|1665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MQ9_033 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3524
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7MQ9|1|L1|G|1657
7MQ9|1|L1|G|1658
7MQ9|1|L1|U|1659
7MQ9|1|L1|C|1660
7MQ9|1|L1|A|1661
7MQ9|1|L1|U|1662
7MQ9|1|L1|A|1663
7MQ9|1|L1|A|1664
7MQ9|1|L1|G|1665
7MQ9|1|L1|C|1666
7MQ9|1|L1|U|1667
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain NA
- U3 small nucleolar ribonucleoprotein protein MPP10
- Chain SI
- Ribosome biogenesis protein BMS1 homolog
- Chain SM
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain SY
- Probable U3 small nucleolar RNA-associated protein 11
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