HL_7MQA_016

3D structure

PDB id

7MQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCCCG

Length

5 nucleotides

Bulged bases

7MQA|1|L1|C|835

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MQA_016 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.257

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7MQA|1|L1|C|833
7MQA|1|L1|C|834
7MQA|1|L1|C|835
7MQA|1|L1|C|840
7MQA|1|L1|G|841

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L4

40S ribosomal protein S4, X isoform

Chain LF

40S ribosomal protein S24

Chain NV

Exosome component 10

Chain SG

U3 small nucleolar RNA-interacting protein 2