HL_7MQA_020
3D structure
- PDB id
- 7MQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GA(PSU)CAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MQA_020 not in the Motif Atlas
- Geometric match to HL_5TBW_006
- Geometric discrepancy: 0.1324
- The information below is about HL_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
7MQA|1|L1|G|1054
7MQA|1|L1|A|1055
7MQA|1|L1|PSU|1056
7MQA|1|L1|C|1057
7MQA|1|L1|A|1058
7MQA|1|L1|G|1059
7MQA|1|L1|A|1060
7MQA|1|L1|U|1061
7MQA|1|L1|A|1062
7MQA|1|L1|C|1063
7MQA|1|L1|C|1064
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain LR
- Transducin beta-like protein 3
- Chain NA
- U3 small nucleolar ribonucleoprotein protein MPP10
- Chain NG
- 40S ribosomal protein S14
- Chain NL
- Probable dimethyladenosine transferase
- Chain SW
- RNA-binding protein PNO1
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