HL_7MSC_012

3D structure

PDB id

7MSC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Pre_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

7MSC|1|A|G|412, 7MSC|1|A|A|413, 7MSC|1|A|G|414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MSC_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1013

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7MSC|1|A|G|410
7MSC|1|A|U|411
7MSC|1|A|G|412
7MSC|1|A|A|413
7MSC|1|A|G|414
7MSC|1|A|A|415
7MSC|1|A|G|416
7MSC|1|A|C|417
7MSC|1|A|C|418

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24