HL_7MSH_047

3D structure

PDB id

7MSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Pre_R1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UUUACUAAAAA

Length

11 nucleotides

Bulged bases

7MSH|1|A|A|2014, 7MSH|1|A|C|2015, 7MSH|1|A|U|2016, 7MSH|1|A|A|2020

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MSH_047 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.1487

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7MSH|1|A|U|2011
7MSH|1|A|U|2012
7MSH|1|A|U|2013
7MSH|1|A|A|2014
7MSH|1|A|C|2015
7MSH|1|A|U|2016
7MSH|1|A|A|2017
7MSH|1|A|A|2018
7MSH|1|A|A|2019
7MSH|1|A|A|2020
7MSH|1|A|A|2021

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2