HL_7MSH_122

3D structure

PDB id

7MSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Pre_R1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GUUUCCUUCCUUGGGAU

Length

17 nucleotides

Bulged bases

7MSH|1|a|U|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MSH_122 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3991

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

7MSH|1|a|G|827
7MSH|1|a|U|828
7MSH|1|a|U|829
7MSH|1|a|U|830
7MSH|1|a|C|831
7MSH|1|a|C|832
7MSH|1|a|U|833
7MSH|1|a|U|834
7MSH|1|a|C|835
7MSH|1|a|C|836
7MSH|1|a|U|837
7MSH|1|a|U|838
7MSH|1|a|G|839
7MSH|1|a|G|840
7MSH|1|a|G|841
7MSH|1|a|A|842
7MSH|1|a|U|843

Current chains

Chain a

16S rRNA

Nearby chains

Chain f

30S ribosomal protein S6

Chain r

30S ribosomal protein S18 1