HL_7MSH_123

3D structure

PDB id

7MSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Pre_R1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GCUAACGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MSH_123 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2368

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

7MSH|1|a|G|854
7MSH|1|a|C|855
7MSH|1|a|U|856
7MSH|1|a|A|857
7MSH|1|a|A|858
7MSH|1|a|C|859
7MSH|1|a|G|860
7MSH|1|a|C|861

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S5

Chain h

30S ribosomal protein S8