HL_7MSM_108
3D structure
- PDB id
- 7MSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mtb 70SIC in complex with MtbEttA at Trans_R0 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MSM_108 not in the Motif Atlas
- Homologous match to HL_4YCO_003
- Geometric discrepancy: 0.0685
- The information below is about HL_4YCO_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
7MSM|1|y|G|54
7MSM|1|y|U|55
7MSM|1|y|U|56
7MSM|1|y|C|57
7MSM|1|y|A|58
7MSM|1|y|A|59
7MSM|1|y|A|60
7MSM|1|y|U|61
7MSM|1|y|C|62
Current chains
- Chain y
- initiator tRNA (Met)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5
- Chain x
- Energy-dependent translational throttle protein EttA
Coloring options: