7MSM Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7MSM_109 | 1/A/59:68 | Pseudoknot with intercalation | homologous HL_4WF9_067 HL_17803.1 | |
| HL_7MSM_001 | 1/A/87:96 | Pseudoknot geometry | homologous HL_4WF9_002 HL_00911.1 | |
| HL_7MSM_002 | 1/A/123:128 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_7MSM_003 | 1/A/137:144 | GNRA wlth tandem sheared | homologous HL_4WF9_004 HL_98423.1 | |
| HL_7MSM_004 | 1/A/160:170 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_7MSM_005 | 1/A/196:203 | No text annotation | homologous HL_7A0S_006 HL_48677.1 | |
| HL_7MSM_006 | 1/A/227:232 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_7MSM_007 | 1/A/248:254 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_7MSM_010 | 1/A/388:395 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_13999.1 | |
| HL_7MSM_011 | 1/A/402:406 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_7MSM_012 | 1/A/410:418 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_7MSM_115 | 1/A/471:481 | No text annotation | homologous HL_9DFE_012 HL_91503.8 | |
| HL_7MSM_014 | 1/A/499:506 | Pseudoknot geometry | homologous HL_5J7L_146 NA | |
| HL_7MSM_015 | 1/A/551:556 | GNRA | homologous HL_4WF9_015 HL_34789.1 | |
| HL_7MSM_016 | 1/A/576:581 | GNRA | homologous HL_4WF9_016 HL_34789.1 | |
| HL_7MSM_018 | 1/A/668:677 | T-loop with 2 stacked bulged bases | geometric HL_4WF9_018 HL_33597.1 | |
| HL_7MSM_019 | 1/A/715:720 | No text annotation | geometric HL_2Y9H_003 HL_75660.6 | |
| HL_7MSM_020 | 1/A/733:738 | GNRA | homologous HL_7RQB_020 NA | |
| HL_7MSM_021 | 1/A/745:751 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_7MSM_023 | 1/A/841:848 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_7MSM_024 | 1/A/872:883 | No text annotation | ||
| HL_7MSM_025 | 1/A/908:914 | No text annotation | homologous HL_5J7L_156 NA | |
| HL_7MSM_026 | 1/A/955:960 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_7MSM_028 | 1/A/1083:1090 | GNRA | homologous HL_7A0S_026 HL_34789.1 | |
| HL_7MSM_029 | 1/A/1107:1114 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_7MSM_032 | 1/A/1303:1308 | No text annotation | geometric HL_2Y8W_001 NA | |
| HL_7MSM_033 | 1/A/1353:1358 | GNRA | homologous HL_4WF9_031 HL_34789.1 | |
| HL_7MSM_034 | 1/A/1412:1420 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_33597.1 | |
| HL_7MSM_035 | 1/A/1455:1461 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_49081.1 | |
| HL_7MSM_036 | 1/A/1494:1499 | GNRA | homologous HL_5J7L_167 NA | |
| HL_7MSM_037 | 1/A/1520:1529 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_7MSM_039 | 1/A/1688:1699 | Pseudoknot | homologous HL_7A0S_036 HL_00824.1 | |
| HL_7MSM_040 | 1/A/1729:1735 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
| HL_7MSM_041 | 1/A/1770:1777 | No text annotation | ||
| HL_7MSM_042 | 1/A/1802:1805 | Mini UNCG | homologous HL_7A0S_039 HL_90436.1 | |
| HL_7MSM_043 | 1/A/1847:1854 | No text annotation | homologous HL_4WF9_038 HL_28592.1 | |
| HL_7MSM_044 | 1/A/1865:1871 | GNRA | homologous HL_5J7L_174 NA | |
| HL_7MSM_045 | 1/A/1926:1931 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_7MSM_111 | 1/A/1947:1980 | No text annotation | ||
| HL_7MSM_046 | 1/A/1961:1967 | No text annotation | geometric HL_5J7L_018 NA | |
| HL_7MSM_047 | 1/A/1986:1990 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_7MSM_048 | 1/A/2011:2021 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_7MSM_049 | 1/A/2040:2045 | GNRA | homologous HL_7RQB_046 NA | |
| HL_7MSM_050 | 1/A/2104:2109 | No text annotation | geometric HL_4V88_198 NA | |
| HL_7MSM_051 | 1/A/2148:2158 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_7MSM_052 | 1/A/2187:2195 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_7MSM_053 | 1/A/2265:2274 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_7MSM_054 | 1/A/2361:2411 | No text annotation | ||
| HL_7MSM_055 | 1/A/2446:2453 | No text annotation | ||
| HL_7MSM_056 | 1/A/2486:2494 | No text annotation | homologous HL_4WF9_049 HL_11974.1 | |
| HL_7MSM_057 | 1/A/2502:2514 | No text annotation | homologous HL_5J7L_187 NA | |
| HL_7MSM_118 | 1/A/2542:2550 | No text annotation | homologous HL_5J7L_219 NA | |
| HL_7MSM_059 | 1/A/2562:2569 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
| HL_7MSM_060 | 1/A/2593:2600 | GNRA with extra cWW | homologous HL_4WF9_053 HL_45359.1 | |
| HL_7MSM_061 | 1/A/2612:2617 | GNRA | homologous HL_7RQB_058 NA | |
| HL_7MSM_062 | 1/A/2642:2651 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_7MSM_063 | 1/A/2709:2717 | No text annotation | homologous HL_4WF9_056 HL_52011.1 | |
| HL_7MSM_064 | 1/A/2766:2773 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_7MSM_065 | 1/A/2789:2795 | No text annotation | homologous HL_7A0S_061 HL_48677.1 | |
| HL_7MSM_066 | 1/A/2832:2837 | GNRA | homologous HL_7RQB_063 NA | |
| HL_7MSM_067 | 1/A/2896:2901 | GNRA | geometric HL_5J7L_197 NA | |
| HL_7MSM_068 | 1/A/2939:2944 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_7MSM_069 | 1/A/2983:2997 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_7MSM_070 | 1/A/3032:3038 | UNCG variation | homologous HL_5J7L_200 NA | |
| HL_7MSM_071 | 1/A/3054:3062 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_7MSM_072 | 1/A/3091:3096 | GNRA | homologous HL_7A0S_068 HL_34789.1 | |
| HL_7MSM_112 | 1/B/33:47 | No text annotation | homologous HL_4V9F_074 HL_97756.3 | |
| HL_7MSM_073 | 1/B/37:43 | No text annotation | homologous HL_5J7L_203 NA | |
| HL_7MSM_074 | 1/B/83:88 | No text annotation | geometric HL_5U3G_001 NA | |
| HL_7MSM_075 | 1/a/15:25 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_7MSM_113 | 1/a/76:92 | No text annotation | ||
| HL_7MSM_077 | 1/a/154:159 | GNRA | homologous HL_4LFB_003 HL_34789.1 | |
| HL_7MSM_078 | 1/a/189:194 | No text annotation | ||
| HL_7MSM_079 | 1/a/210:217 | UNCG | geometric HL_5J7L_009 NA | |
| HL_7MSM_080 | 1/a/258:266 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_7MSM_081 | 1/a/295:300 | GNRA | homologous HL_5J7L_007 NA | |
| HL_7MSM_082 | 1/a/319:332 | No text annotation | ||
| HL_7MSM_083 | 1/a/341:346 | UNCG | homologous HL_4LFB_009 HL_61337.1 | |
| HL_7MSM_084 | 1/a/378:383 | GNRA | homologous HL_4LFB_010 HL_34789.1 | |
| HL_7MSM_085 | 1/a/418:423 | UNCG | homologous HL_5J7L_011 NA | |
| HL_7MSM_086 | 1/a/458:464 | No text annotation | geometric HL_4V88_198 NA | |
| HL_7MSM_114 | 1/a/513:518 | GNRA variation | homologous HL_5J7L_205 NA | |
| HL_7MSM_088 | 1/a/608:614 | No text annotation | homologous HL_6CZR_085 NA | |
| HL_7MSM_089 | 1/a/680:689 | No text annotation | homologous HL_4LFB_015 HL_38491.1 | |
| HL_7MSM_090 | 1/a/717:722 | GNRA | homologous HL_5J7L_016 NA | |
| HL_7MSM_091 | 1/a/777:787 | No text annotation | homologous HL_4LFB_017 HL_38491.1 | |
| HL_7MSM_092 | 1/a/829:841 | No text annotation | ||
| HL_7MSM_093 | 1/a/855:860 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
| HL_7MSM_094 | 1/a/890:895 | GNRA | homologous HL_4LFB_020 HL_34789.1 | |
| HL_7MSM_095 | 1/a/956:965 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_7MSM_096 | 1/a/1005:1010 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_7MSM_097 | 1/a/1067:1072 | GNRA | homologous HL_5J7L_023 NA | |
| HL_7MSM_098 | 1/a/1080:1087 | T-loop related | homologous HL_4LFB_025 HL_63894.1 | |
| HL_7MSM_099 | 1/a/1125:1132 | Mini UNCG | geometric HL_4YAZ_004 HL_90436.1 | |
| HL_7MSM_100 | 1/a/1157:1163 | GNRA | homologous HL_4LFB_027 HL_34789.1 | |
| HL_7MSM_101 | 1/a/1257:1262 | GNRA | homologous HL_5J7L_027 NA | |
| HL_7MSM_102 | 1/a/1306:1315 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_7MSM_103 | 1/a/1348:1359 | No text annotation | homologous HL_5J7L_029 NA | |
| HL_7MSM_104 | 1/a/1442:1447 | UNCG | homologous HL_5J7L_030 NA | |
| HL_7MSM_105 | 1/a/1508:1513 | GNRA | homologous HL_4LFB_032 HL_34789.1 | |
| HL_7MSM_106 | 1/y/13:23 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_7MSM_107 | 1/y/32:40 | tRNA anticodon loop | homologous HL_5E81_212 NA | |
| HL_7MSM_108 | 1/y/54:62 | T-loop with 2 stacked bulged bases | homologous HL_4YCO_003 HL_33597.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7MSM_008 | Pseudoknot geometry | ||
| HL_7MSM_009 | No text annotation | ||
| HL_7MSM_013 | No text annotation | ||
| HL_7MSM_017 | No text annotation | ||
| HL_7MSM_022 | No text annotation | ||
| HL_7MSM_116 | No text annotation | ||
| HL_7MSM_027 | No text annotation | ||
| HL_7MSM_030 | No text annotation | ||
| HL_7MSM_031 | GNRA wlth tandem sheared | ||
| HL_7MSM_110 | No text annotation | ||
| HL_7MSM_117 | No text annotation | ||
| HL_7MSM_038 | No text annotation | ||
| HL_7MSM_058 | No text annotation | ||
| HL_7MSM_076 | No text annotation | ||
| HL_7MSM_087 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7MSM_001 | 1/A/24:30, 1/A/598:604 | Triple sheared with non-canonical cWW | geometric IL_4WF9_001 IL_22311.1 | |
| IL_7MSM_002 | 1/A/36:37, 1/A/531:533 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_7MSM_003 | 1/A/43:44, 1/A/523:525 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_7MSM_004 | 1/A/56:76, 1/A/110:114 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_7MSM_005 | 1/A/81:85, 1/A/98:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_7MSM_006 | 1/A/185:186, 1/A/214:216 | Single stack bend | homologous IL_4WF9_007 IL_15011.1 | |
| IL_7MSM_007 | 1/A/190:196, 1/A/203:210 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 NA | |
| IL_7MSM_008 | 1/A/241:247, 1/A/255:260 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
| IL_7MSM_010 | 1/A/323:325, 1/A/451:455 | 8-nt loop receptor | geometric IL_6DME_002 IL_44025.1 | |
| IL_7MSM_011 | 1/A/357:365, 1/A/439:440 | No text annotation | ||
| IL_7MSM_012 | 1/A/370:372, 1/A/433:434 | Single bulged U | geometric IL_5TBW_086 NA | |
| IL_7MSM_013 | 1/A/375:377, 1/A/426:430 | No text annotation | homologous IL_4WF9_014 IL_76658.1 | |
| IL_7MSM_014 | 1/A/383:385, 1/A/398:399 | Single bulged U | geometric IL_3TZR_002 NA | |
| IL_7MSM_015 | 1/A/570:573, 1/A/584:597 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_7MSM_016 | 1/A/624:627, 1/A/656:659 | Double sheared | homologous IL_4WF9_016 IL_58355.1 | |
| IL_7MSM_017 | 1/A/629:631, 1/A/652:654 | Isolated non-canonical cWW pair | geometric IL_3GM7_006 IL_01003.1 | |
| IL_7MSM_018 | 1/A/633:635, 1/A/649:650 | Single stack bend | geometric IL_5TBW_035 NA | |
| IL_7MSM_191 | 1/A/633:638, 1/A/644:650 | No text annotation | ||
| IL_7MSM_019 | 1/A/635:638, 1/A/644:649 | No text annotation | ||
| IL_7MSM_020 | 1/A/666:668, 1/A/677:679 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_71625.1 | |
| IL_7MSM_021 | 1/A/693:695, 1/A/794:795 | Single bulged A | homologous IL_7A0S_012 IL_14190.1 | |
| IL_7MSM_022 | 1/A/709:713, 1/A/722:726 | AAA cross-strand stack | homologous IL_7A0S_013 IL_66798.3 | |
| IL_7MSM_023 | 1/A/801:803, 1/A/935:937 | Isolated non-canonical cWW pair | homologous IL_4WF9_020 IL_01003.1 | |
| IL_7MSM_024 | 1/A/803:807, 1/A/928:935 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 NA | |
| IL_7MSM_025 | 1/A/826:827, 1/A/892:894 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_7MSM_026 | 1/A/831:832, 1/A/857:859 | Single bulged G | geometric IL_4V9F_026 IL_28408.1 | |
| IL_7MSM_027 | 1/A/832:836, 1/A/853:857 | Triple sheared | homologous IL_4WF9_024 IL_15190.1 | |
| IL_7MSM_028 | 1/A/867:869, 1/A/886:887 | Major groove platform | homologous IL_4WF9_026 IL_48076.7 | |
| IL_7MSM_029 | 1/A/904:906, 1/A/916:920 | Multiple bulged bases | homologous IL_5J7L_265 NA | |
| IL_7MSM_030 | 1/A/966:967, 1/A/1068:1070 | Single stack bend | homologous IL_4WF9_028 IL_15011.1 | |
| IL_7MSM_031 | 1/A/973:978, 1/A/1057:1062 | No text annotation | ||
| IL_7MSM_032 | 1/A/985:991, 1/A/1044:1050 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 NA | |
| IL_7MSM_033 | 1/A/991:992, 1/A/1042:1044 | Minor groove platform | geometric IL_7RQB_028 NA | |
| IL_7MSM_034 | 1/A/993:998, 1/A/1038:1041 | C-loop | homologous IL_4WF9_033 IL_16301.1 | |
| IL_7MSM_035 | 1/A/1000:1002, 1/A/1034:1036 | Isolated cWS basepair | homologous IL_4WF9_034 NA | |
| IL_7MSM_036 | 1/A/1005:1010, 1/A/1026:1031 | Triple sheared related | geometric IL_4V88_421 NA | |
| IL_7MSM_037 | 1/A/1010:1011, 1/A/1024:1026 | Single bulged A | geometric IL_7RQB_048 NA | |
| IL_7MSM_038 | 1/A/1077:1078, 1/A/1095:1097 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_7MSM_039 | 1/A/1123:1125, 1/A/1289:1290 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_7MSM_040 | 1/A/1127:1131, 1/A/1283:1287 | UAA/GAN | homologous IL_5J7L_277 NA | |
| IL_7MSM_041 | 1/A/1133:1140, 1/A/1280:1281 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_7MSM_042 | 1/A/1140:1142, 1/A/1279:1280 | Single bulged U | homologous IL_4WF9_038 IL_97561.1 | |
| IL_7MSM_043 | 1/A/1147:1153, 1/A/1269:1274 | Kink-turn related | geometric IL_4V9F_040 IL_57188.6 | |
| IL_7MSM_044 | 1/A/1153:1159, 1/A/1253:1269 | No text annotation | geometric IL_4WF9_040 IL_50715.4 | |
| IL_7MSM_045 | 1/A/1160:1163, 1/A/1250:1252 | Isolated non-canonical cWW pair | homologous IL_7A0S_038 IL_30229.1 | |
| IL_7MSM_046 | 1/A/1172:1182, 1/A/1235:1241 | No text annotation | ||
| IL_7MSM_047 | 1/A/1328:1330, 1/A/1378:1381 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.4 | |
| IL_7MSM_048 | 1/A/1339:1346, 1/A/1365:1369 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_7MSM_049 | 1/A/1393:1400, 1/A/2249:2255 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_7MSM_050 | 1/A/1450:1454, 1/A/1462:1464 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_06671.1 | |
| IL_7MSM_051 | 1/A/1482:1486, 1/A/1507:1511 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_7MSM_052 | 1/A/1488:1492, 1/A/1501:1505 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_7MSM_053 | 1/A/1544:1546, 1/A/1822:1824 | Isolated non-canonical cWW pair | geometric IL_5TBW_127 NA | |
| IL_7MSM_054 | 1/A/1556:1561, 1/A/1642:1649 | No text annotation | ||
| IL_7MSM_061 | 1/A/1655:1659, 1/A/1814:1817 | No text annotation | ||
| IL_7MSM_062 | 1/A/1670:1673, 1/A/1794:1798 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
| IL_7MSM_063 | 1/A/1675:1678, 1/A/1788:1792 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_7MSM_064 | 1/A/1706:1709, 1/A/1759:1763 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_7MSM_065 | 1/A/1711:1716, 1/A/1752:1757 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_7MSM_066 | 1/A/1719:1720, 1/A/1743:1749 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_7MSM_067 | 1/A/1726:1728, 1/A/1736:1737 | Single bulged A | homologous IL_5J7L_302 NA | |
| IL_7MSM_068 | 1/A/1886:1891, 1/A/2242:2244 | No text annotation | ||
| IL_7MSM_069 | 1/A/1898:1900, 1/A/2233:2235 | Isolated tWW turn | homologous IL_5J7L_305 NA | |
| IL_7MSM_070 | 1/A/1901:1904, 1/A/2231:2232 | Major groove platform; stack outside cWW | homologous IL_5J7L_306 NA | |
| IL_7MSM_193 | 1/A/1901:1909, 1/A/2228:2232 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
| IL_7MSM_071 | 1/A/1904:1909, 1/A/2228:2231 | Intercalated tWH | geometric IL_5J7L_307 NA | |
| IL_7MSM_072 | 1/A/1921:1926, 1/A/1931:1937 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_7MSM_073 | 1/A/1947:1952, 1/A/1977:1980 | tWW and near cWH | geometric IL_6DLR_005 IL_40706.1 | |
| IL_7MSM_074 | 1/A/2004:2005, 1/A/2218:2220 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_7MSM_075 | 1/A/2032:2038, 1/A/2047:2055 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_7MSM_076 | 1/A/2071:2074, 1/A/2140:2141 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_7MSM_077 | 1/A/2075:2076, 1/A/2136:2139 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_7MSM_078 | 1/A/2080:2083, 1/A/2131:2132 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_7MSM_079 | 1/A/2085:2089, 1/A/2125:2129 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_7MSM_080 | 1/A/2090:2095, 1/A/2119:2124 | No text annotation | geometric IL_5LR4_002 IL_71841.1 | |
| IL_7MSM_081 | 1/A/2098:2101, 1/A/2112:2116 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_7MSM_082 | 1/A/2171:2172, 1/A/2202:2205 | Bulged stacked bases | geometric IL_5J7L_318 NA | |
| IL_7MSM_083 | 1/A/2172:2183, 1/A/2199:2202 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_7MSM_084 | 1/A/2288:2290, 1/A/2855:2856 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_7MSM_085 | 1/A/2292:2294, 1/A/2850:2853 | No text annotation | homologous IL_4WF9_079 IL_80025.1 | |
| IL_7MSM_086 | 1/A/2307:2308, 1/A/2676:2679 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_7MSM_087 | 1/A/2318:2321, 1/A/2473:2477 | No text annotation | geometric IL_3NPQ_006 IL_93503.1 | |
| IL_7MSM_088 | 1/A/2322:2324, 1/A/2470:2472 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 NA | |
| IL_7MSM_089 | 1/A/2345:2347, 1/A/2416:2418 | No text annotation | homologous IL_7RQB_084 NA | |
| IL_7MSM_090 | 1/A/2347:2357, 1/A/2415:2416 | Major groove intercalation | geometric IL_1NBS_009 IL_71421.1 | |
| IL_7MSM_091 | 1/A/2439:2441, 1/A/2458:2459 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_7MSM_194 | 1/A/2535:2537, 1/A/2555:2559 | No text annotation | homologous IL_9DFE_088 IL_14250.1 | |
| IL_7MSM_093 | 1/A/2588:2591, 1/A/2602:2605 | Double sheared | homologous IL_4WF9_087 IL_58355.1 | |
| IL_7MSM_094 | 1/A/2639:2641, 1/A/2652:2653 | Major groove platform | homologous IL_7A0S_082 IL_48076.7 | |
| IL_7MSM_095 | 1/A/2691:2692, 1/A/2736:2738 | Single stack bend | homologous IL_4WF9_089 IL_15011.1 | |
| IL_7MSM_096 | 1/A/2692:2693, 1/A/2734:2736 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_7MSM_097 | 1/A/2695:2697, 1/A/2731:2732 | Major groove platform | geometric IL_7A0S_085 IL_48076.7 | |
| IL_7MSM_098 | 1/A/2697:2699, 1/A/2727:2731 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_7MSM_099 | 1/A/2699:2701, 1/A/2725:2727 | Isolated non-canonical cWW pair | geometric IL_5TBW_016 NA | |
| IL_7MSM_100 | 1/A/2704:2708, 1/A/2718:2722 | Double sheared with non-canonical cWW | homologous IL_4WF9_093 IL_87767.1 | |
| IL_7MSM_101 | 1/A/2745:2746, 1/A/2818:2820 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_7MSM_102 | 1/A/2748:2750, 1/A/2812:2816 | Isolated non-canonical cWW with bulges | homologous IL_5J7L_340 NA | |
| IL_7MSM_103 | 1/A/2750:2751, 1/A/2809:2812 | No text annotation | geometric IL_4WF9_096 IL_44609.1 | |
| IL_7MSM_104 | 1/A/2760:2761, 1/A/2778:2781 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_7MSM_105 | 1/A/2829:2830, 1/A/2839:2841 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_7MSM_106 | 1/A/2874:2878, 1/A/3012:3020 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.4 | |
| IL_7MSM_107 | 1/A/2890:2896, 1/A/2901:2906 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.5 | |
| IL_7MSM_108 | 1/A/2918:2922, 1/A/2963:2965 | C-loop | homologous IL_7RQB_104 NA | |
| IL_7MSM_109 | 1/A/2925:2929, 1/A/2956:2960 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_7MSM_110 | 1/A/2933:2934, 1/A/2949:2952 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_7MSM_111 | 1/A/2975:2980, 1/A/3000:3005 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_7MSM_112 | 1/A/3073:3074, 1/A/3113:3115 | Major groove intercalation | homologous IL_7A0S_099 IL_28408.1 | |
| IL_7MSM_113 | 1/A/3078:3080, 1/A/3106:3109 | Decoding loop related | homologous IL_7A0S_100 IL_05502.1 | |
| IL_7MSM_114 | 1/A/3082:3087, 1/A/3100:3104 | tHS double platform | homologous IL_4WF9_108 IL_48489.1 | |
| IL_7MSM_115 | 1/B/1:4, 1/B/111:113 | Isolated non-canonical cWW pair | geometric IL_3TD0_005 NA | |
| IL_7MSM_116 | 1/B/16:17, 1/B/64:66 | Major groove intercalation | homologous IL_4WF9_112 IL_14190.1 | |
| IL_7MSM_117 | 1/B/22:28, 1/B/54:59 | No text annotation | ||
| IL_7MSM_204 | 1/B/29:30, 1/B/50:53 | Major groove minor groove platform; mini C-loop | homologous IL_4WF9_126 IL_73108.1 | |
| IL_7MSM_119 | 1/B/33:37, 1/B/43:47 | Symmetric double minor groove platform | geometric IL_5NS3_002 IL_58103.12 | |
| IL_7MSM_120 | 1/B/70:78, 1/B/93:101 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_7MSM_121 | 1/a/33:35, 1/a/543:544 | Single bulged G | homologous IL_4LFB_001 IL_28408.1 | |
| IL_7MSM_122 | 1/a/47:48, 1/a/395:397 | Single bulged A | homologous IL_4LFB_002 IL_14190.1 | |
| IL_7MSM_123 | 1/a/50:55, 1/a/358:360 | No text annotation | geometric IL_5J7L_003 NA | |
| IL_7MSM_124 | 1/a/57:59, 1/a/355:356 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_7MSM_125 | 1/a/66:69, 1/a/98:99 | Multiple bulged bases | homologous IL_4LFB_005 IL_71421.1 | |
| IL_7MSM_126 | 1/a/70:72, 1/a/94:97 | Minor groove platform with extra cWW | homologous IL_5J7L_006 NA | |
| IL_7MSM_127 | 1/a/73:76, 1/a/92:93 | Minor groove platform | homologous IL_5J7L_007 NA | |
| IL_7MSM_128 | 1/a/76:81, 1/a/86:92 | No text annotation | ||
| IL_7MSM_129 | 1/a/124:127, 1/a/230:231 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_7MSM_130 | 1/a/128:132, 1/a/226:229 | Minor groove platform related | homologous IL_5J7L_010 NA | |
| IL_7MSM_131 | 1/a/143:149, 1/a/164:171 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_7MSM_132 | 1/a/241:246, 1/a/276:283 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_7MSM_205 | 1/a/248:251, 1/a/273:274 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_7MSM_134 | 1/a/291:292, 1/a/303:307 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_7MSM_135 | 1/a/366:368, 1/a/391:392 | Single bulged U | homologous IL_5J7L_017 NA | |
| IL_7MSM_136 | 1/a/370:374, 1/a/388:389 | C-loop | geometric IL_4LFB_015 IL_26900.1 | |
| IL_7MSM_137 | 1/a/374:375, 1/a/386:388 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_7MSM_138 | 1/a/408:415, 1/a/426:432 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_7MSM_139 | 1/a/439:441, 1/a/483:488 | No text annotation | homologous IL_5J7L_021 NA | |
| IL_7MSM_140 | 1/a/445:449, 1/a/474:479 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_82100.1 | |
| IL_7MSM_141 | 1/a/449:453, 1/a/470:474 | No text annotation | ||
| IL_7MSM_195 | 1/a/449:455, 1/a/468:474 | No text annotation | homologous IL_5J7L_023 NA | |
| IL_7MSM_142 | 1/a/455:458, 1/a/464:468 | No text annotation | ||
| IL_7MSM_143 | 1/a/495:502, 1/a/531:532 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_11411.1 | |
| IL_7MSM_144 | 1/a/506:512, 1/a/519:527 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_7MSM_145 | 1/a/560:566, 1/a/873:874 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_7MSM_146 | 1/a/571:575, 1/a/748:752 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
| IL_7MSM_147 | 1/a/585:587, 1/a/635:636 | Major groove platform | homologous IL_4LFB_024 IL_48076.7 | |
| IL_7MSM_148 | 1/a/588:589, 1/a/631:634 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_7MSM_206 | 1/a/596:602, 1/a/620:624 | No text annotation | ||
| IL_7MSM_150 | 1/a/645:646, 1/a/742:745 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_74641.1 | |
| IL_7MSM_151 | 1/a/648:649, 1/a/738:740 | Major groove platform | homologous IL_4LFB_028 IL_48076.7 | |
| IL_7MSM_152 | 1/a/653:657, 1/a/731:734 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_7MSM_198 | 1/a/664:668, 1/a/704:708 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_7MSM_154 | 1/a/675:679, 1/a/690:697 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_7MSM_155 | 1/a/765:769, 1/a/795:796 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_7MSM_156 | 1/a/770:774, 1/a/790:794 | tSH-tHW-tHS | homologous IL_5J7L_037 NA | |
| IL_7MSM_157 | 1/a/880:887, 1/a/898:903 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_7MSM_199 | 1/a/915:916, 1/a/1386:1388 | Single bulged A | homologous IL_4LFB_035 IL_14190.1 | |
| IL_7MSM_159 | 1/a/918:920, 1/a/1383:1384 | Single bulged G | homologous IL_4LFB_036 IL_28408.1 | |
| IL_7MSM_160 | 1/a/926:928, 1/a/1373:1377 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_7MSM_161 | 1/a/946:947, 1/a/1218:1220 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_7MSM_162 | 1/a/986:990, 1/a/1035:1036 | Minor groove platform | geometric IL_4LFB_039 IL_61370.1 | |
| IL_7MSM_163 | 1/a/993:996, 1/a/1028:1032 | No text annotation | ||
| IL_7MSM_200 | 1/a/993:999, 1/a/1016:1032 | No text annotation | ||
| IL_7MSM_164 | 1/a/996:999, 1/a/1016:1028 | No text annotation | ||
| IL_7MSM_165 | 1/a/1001:1003, 1/a/1012:1014 | Isolated non-canonical cWW pair | geometric IL_1RPU_001 NA | |
| IL_7MSM_166 | 1/a/1003:1005, 1/a/1010:1012 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_01003.1 | |
| IL_7MSM_167 | 1/a/1039:1041, 1/a/1200:1201 | Single bulged U | homologous IL_5J7L_046 NA | |
| IL_7MSM_168 | 1/a/1043:1047, 1/a/1196:1198 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_7MSM_169 | 1/a/1048:1049, 1/a/1191:1195 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_7MSM_170 | 1/a/1051:1052, 1/a/1187:1189 | Single bulged A | geometric IL_5J7L_049 NA | |
| IL_7MSM_171 | 1/a/1052:1054, 1/a/1185:1187 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_68118.1 | |
| IL_7MSM_172 | 1/a/1115:1119, 1/a/1136:1141 | No text annotation | homologous IL_5J7L_051 NA | |
| IL_7MSM_173 | 1/a/1120:1123, 1/a/1134:1135 | Minor groove platform | homologous IL_5J7L_052 NA | |
| IL_7MSM_174 | 1/a/1150:1153, 1/a/1167:1173 | No text annotation | geometric IL_5J7L_053 NA | |
| IL_7MSM_175 | 1/a/1239:1245, 1/a/1276:1282 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_7MSM_176 | 1/a/1247:1250, 1/a/1269:1274 | 180 degree turn | homologous IL_4LFB_052 IL_08849.1 | |
| IL_7MSM_177 | 1/a/1251:1255, 1/a/1264:1268 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 NA | |
| IL_7MSM_178 | 1/a/1295:1300, 1/a/1321:1326 | No text annotation | geometric IL_4LFB_055 IL_57885.1 | |
| IL_7MSM_179 | 1/a/1392:1394, 1/a/1494:1497 | No text annotation | geometric IL_5J7L_058 NA | |
| IL_7MSM_180 | 1/a/1394:1397, 1/a/1490:1494 | No text annotation | homologous IL_5J7L_059 NA | |
| IL_7MSM_181 | 1/a/1398:1400, 1/a/1487:1489 | Isolated non-canonical cWW pair | geometric IL_5MWI_004 NA | |
| IL_7MSM_182 | 1/a/1400:1402, 1/a/1484:1487 | No text annotation | geometric IL_8UO6_002 NA | |
| IL_7MSM_183 | 1/a/1405:1407, 1/a/1479:1481 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_7MSM_184 | 1/a/1409:1412, 1/a/1474:1477 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_7MSM_185 | 1/a/1417:1420, 1/a/1466:1469 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_7MSM_186 | 1/a/1423:1428, 1/a/1459:1463 | Triple sheared related | homologous IL_5J7L_063 NA | |
| IL_7MSM_187 | 1/a/1428:1430, 1/a/1457:1459 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_01003.1 | |
| IL_7MSM_188 | 1/a/1433:1436, 1/a/1452:1454 | Isolated tHS basepair with bulges | geometric IL_7RQB_012 NA | |
| IL_7MSM_189 | 1/a/1438:1441, 1/a/1448:1450 | No text annotation | homologous IL_5J7L_065 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7MSM_009 | No text annotation | ||
| IL_7MSM_201 | No text annotation | ||
| IL_7MSM_190 | No text annotation | ||
| IL_7MSM_055 | No text annotation | ||
| IL_7MSM_202 | No text annotation | ||
| IL_7MSM_056 | No text annotation | ||
| IL_7MSM_203 | No text annotation | ||
| IL_7MSM_057 | No text annotation | ||
| IL_7MSM_058 | No text annotation | ||
| IL_7MSM_059 | No text annotation | ||
| IL_7MSM_192 | No text annotation | ||
| IL_7MSM_060 | No text annotation | ||
| IL_7MSM_092 | No text annotation | ||
| IL_7MSM_118 | No text annotation | ||
| IL_7MSM_133 | No text annotation | ||
| IL_7MSM_196 | No text annotation | ||
| IL_7MSM_149 | No text annotation | ||
| IL_7MSM_197 | No text annotation | ||
| IL_7MSM_153 | No text annotation | ||
| IL_7MSM_158 | Isolated non-canonical cWW with bulges |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7MSM_001 | 1/A/30:31, 1/A/563:570, 1/A/597:598 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_7MSM_029 | 1/A/30:31, 1/A/563:573, 1/A/584:598 | No text annotation | homologous J3_5J7L_066 NA | |
| J3_7MSM_030 | 1/A/32:35, 1/A/534:550, 1/A/557:562 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_7MSM_031 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_7MSM_002 | 1/A/318:320, 1/A/458:464, 1/A/488:493 | No text annotation | ||
| J3_7MSM_032 | 1/A/329:332, 1/A/351:352, 1/A/445:447 | No text annotation | ||
| J3_7MSM_033 | 1/A/379:383, 1/A/399:408, 1/A/420:424 | No text annotation | homologous J3_4WF9_015 J3_77124.1 | |
| J3_7MSM_004 | 1/A/812:818, 1/A/902:904, 1/A/920:923 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_7MSM_005 | 1/A/827:829, 1/A/861:865, 1/A/889:892 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_7MSM_007 | 1/A/1429:1434, 1/A/1860:1862, 1/A/1874:1877 | No text annotation | homologous J3_5J7L_041 NA | |
| J3_7MSM_008 | 1/A/1437:1440, 1/A/1840:1846, 1/A/1855:1857 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_7MSM_009 | 1/A/1475:1481, 1/A/1512:1516, 1/A/1533:1534 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_7MSM_010 | 1/A/1547:1553, 1/A/1652:1654, 1/A/1818:1821 | No text annotation | ||
| J3_7MSM_011 | 1/A/1663:1667, 1/A/1801:1802, 1/A/1805:1810 | No text annotation | geometric J3_4V9F_017 J3_08594.1 | |
| J3_7MSM_012 | 1/A/2328:2330, 1/A/2433:2437, 1/A/2461:2466 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_7MSM_036 | 1/A/2520:2522, 1/A/2622:2633, 1/A/2659:2665 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_7MSM_013 | 1/A/2533:2535, 1/A/2559:2561, 1/A/2570:2575 | No text annotation | homologous J3_4WF9_008 J3_05327.1 | |
| J3_7MSM_014 | 1/A/2755:2758, 1/A/2783:2785, 1/A/2799:2805 | No text annotation | homologous J3_4WF9_009 J3_32601.6 | |
| J3_7MSM_015 | 1/A/3049:3051, 1/A/3065:3071, 1/A/3117:3121 | No text annotation | ||
| J3_7MSM_016 | 1/B/9:15, 1/B/67:69, 1/B/102:106 | No text annotation | homologous J3_5J7L_049 NA | |
| J3_7MSM_017 | 1/a/49:50, 1/a/360:366, 1/a/392:394 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_7MSM_037 | 1/a/49:55, 1/a/358:366, 1/a/392:394 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_7MSM_018 | 1/a/577:579, 1/a/642:645, 1/a/745:746 | No text annotation | homologous J3_5J7L_002 NA | |
| J3_7MSM_038 | 1/a/577:579, 1/a/642:646, 1/a/742:746 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_7MSM_019 | 1/a/663:664, 1/a/708:716, 1/a/723:725 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_7MSM_020 | 1/a/817:820, 1/a/850:854, 1/a/861:867 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_7MSM_021 | 1/a/929:932, 1/a/1336:1342, 1/a/1365:1372 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_7MSM_022 | 1/a/936:939, 1/a/1227:1229, 1/a/1329:1332 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_7MSM_023 | 1/a/948:955, 1/a/966:977, 1/a/1213:1217 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_7MSM_024 | 1/a/983:986, 1/a/1036:1038, 1/a/1202:1207 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_7MSM_039 | 1/a/983:990, 1/a/1035:1038, 1/a/1202:1207 | No text annotation | homologous J3_4LFB_016 J3_28881.1 | |
| J3_7MSM_025 | 1/a/1054:1059, 1/a/1098:1104, 1/a/1179:1185 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_7MSM_041 | 1/a/1064:1065, 1/a/1074:1077, 1/a/1090:1093 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_7MSM_027 | 1/a/1107:1109, 1/a/1147:1150, 1/a/1173:1176 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_7MSM_040 | 1/a/1107:1109, 1/a/1147:1153, 1/a/1167:1176 | No text annotation | homologous J3_4LFB_018 J3_40706.1 | |
| J3_7MSM_028 | 1/a/1229:1233, 1/a/1288:1295, 1/a/1326:1329 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J4_7MSM_001 | 1/A/270:275, 1/A/313:318, 1/A/493:495, 1/A/510:513 | No text annotation | ||
| J4_7MSM_002 | 1/A/379:383, 1/A/399:402, 1/A/406:408, 1/A/420:424 | No text annotation | homologous J4_4WF9_002 J4_16174.1 | |
| J4_7MSM_003 | 1/A/1401:1407, 1/A/1425:1426, 1/A/1880:1883, 1/A/2247:2248 | No text annotation | homologous J4_7A0S_004 J4_64571.6 | |
| J4_7MSM_004 | 1/A/1441:1445, 1/A/1469:1474, 1/A/1535:1536, 1/A/1832:1839 | No text annotation | ||
| J4_7MSM_005 | 1/A/1681:1684, 1/A/1703:1705, 1/A/1764:1768, 1/A/1779:1785 | No text annotation | ||
| J4_7MSM_006 | 1/A/2005:2010, 1/A/2022:2026, 1/A/2061:2064, 1/A/2213:2218 | No text annotation | ||
| J4_7MSM_007 | 1/A/2067:2069, 1/A/2143:2144, 1/A/2162:2171, 1/A/2205:2210 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_7MSM_008 | 1/A/2523:2527, 1/A/2581:2585, 1/A/2608:2610, 1/A/2619:2621 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_7MSM_009 | 1/A/2880:2884, 1/A/2912:2914, 1/A/2969:2973, 1/A/3007:3010 | No text annotation | ||
| J4_7MSM_010 | 1/a/110:118, 1/a/237:239, 1/a/285:288, 1/a/310:311 | No text annotation | ||
| J4_7MSM_014 | 1/a/139:140, 1/a/174:181, 1/a/202:209, 1/a/218:219 | No text annotation | ||
| J4_7MSM_012 | 1/a/566:568, 1/a/755:760, 1/a/801:812, 1/a/872:873 | No text annotation | homologous J4_5J7L_003 NA | |
| J4_7MSM_013 | 1/y/7:10, 1/y/26:28, 1/y/44:50, 1/y/66:67 | tRNA junction | homologous J4_4V9Q_031 J4_58311.1 | |
| J5_7MSM_012 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/150:152, 1/A/178:180 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_7MSM_002 | 1/A/270:275, 1/A/313:320, 1/A/458:464, 1/A/488:495, 1/A/510:513 | No text annotation | ||
| J5_7MSM_003 | 1/A/619:621, 1/A/662:666, 1/A/679:681, 1/A/1392:1393, 1/A/2255:2256 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_7MSM_004 | 1/A/686:691, 1/A/797:800, 1/A/938:941, 1/A/1327:1328, 1/A/1381:1387 | No text annotation | homologous J5_4WF9_004 J5_74302.6 | |
| J5_7MSM_005 | 1/A/704:707, 1/A/728:733, 1/A/738:742, 1/A/754:763, 1/A/776:785 | No text annotation | ||
| J5_7MSM_006 | 1/A/1909:1917, 1/A/1941:1942, 1/A/1985:1986, 1/A/1990:1998, 1/A/2226:2228 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_7MSM_007 | 1/A/2295:2302, 1/A/2684:2691, 1/A/2738:2745, 1/A/2820:2826, 1/A/2844:2849 | No text annotation | ||
| J5_7MSM_008 | 1/A/2311:2314, 1/A/2481:2484, 1/A/2496:2497, 1/A/2519:2520, 1/A/2665:2673 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J5_7MSM_009 | 1/a/39:42, 1/a/402:405, 1/a/435:439, 1/a/488:491, 1/a/536:539 | No text annotation | homologous J5_5J7L_001 NA | |
| J5_7MSM_010 | 1/a/39:42, 1/a/402:405, 1/a/435:441, 1/a/483:491, 1/a/536:539 | No text annotation | homologous J5_5J7L_002 NA | |
| J5_7MSM_011 | 1/a/61:64, 1/a/101:108, 1/a/313:315, 1/a/336:338, 1/a/349:353 | No text annotation | homologous J5_4LFB_002 J5_58574.1 | |
| J6_7MSM_001 | 1/A/45:46, 1/A/181:185, 1/A/216:226, 1/A/233:237, 1/A/264:268, 1/A/515:522 | No text annotation | ||
| J6_7MSM_002 | 1/A/2311:2314, 1/A/2481:2484, 1/A/2496:2497, 1/A/2519:2522, 1/A/2622:2633, 1/A/2659:2673 | No text annotation | ||
| J7_7MSM_001 | 1/A/945:951, 1/A/964:965, 1/A/1071:1074, 1/A/1100:1105, 1/A/1116:1120, 1/A/1293:1294, 1/A/1317:1323 | No text annotation | ||
| J8_7MSM_001 | 1/A/7:15, 1/A/613:619, 1/A/2256:2261, 1/A/2278:2281, 1/A/2863:2868, 1/A/3026:3029, 1/A/3041:3046, 1/A/3124:3130 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7MSM_003 | No text annotation | ||
| J3_7MSM_034 | No text annotation | ||
| J3_7MSM_006 | No text annotation | ||
| J3_7MSM_035 | No text annotation | ||
| J3_7MSM_026 | No text annotation | ||
| J4_7MSM_011 | No text annotation | ||
| J5_7MSM_001 | No text annotation |
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