HL_7N1P_064

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N1P_064 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.077

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.7

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

7N1P|1|23|G|1281
7N1P|1|23|U|1282
7N1P|1|23|G|1283
7N1P|1|23|A|1284
7N1P|1|23|A|1285
7N1P|1|23|A|1286
7N1P|1|23|A|1287
7N1P|1|23|G|1288
7N1P|1|23|C|1289

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LQ

50S ribosomal protein L17

Chain LV

50S ribosomal protein L22

Chain Lf

50S ribosomal protein L32