HL_7N2C_107

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CAG(H2U)(H2U)GG(H2U)AG

Length

10 nucleotides

Bulged bases

7N2C|1|Pt|G|18, 7N2C|1|Pt|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N2C_107 not in the Motif Atlas

Homologous match to HL_6JXM_001

Geometric discrepancy: 0.2742

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

7N2C|1|Pt|C|13
7N2C|1|Pt|A|14
7N2C|1|Pt|G|15
7N2C|1|Pt|H2U|16
7N2C|1|Pt|H2U|17
7N2C|1|Pt|G|18
7N2C|1|Pt|G|19
7N2C|1|Pt|H2U|20
7N2C|1|Pt|A|21
7N2C|1|Pt|G|22

Current chains

Chain Pt

Chains: Pt

Nearby chains

Chain 23

Large subunit ribosomal RNA; LSU rRNA

Chain LE

50S ribosomal protein L5