RNA 3D Hub //

7N2C Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7N2C_0011/16/12:22No text annotation
homologous
HL_4LFB_001
HL_31940.1
HL_7N2C_0031/16/158:163GNRA
homologous
HL_5J7L_003
NA
HL_7N2C_0041/16/186:191GNRA
homologous
HL_5J7L_004
NA
HL_7N2C_0051/16/203:214Externally structured
geometric
HL_8C3A_022
NA
HL_7N2C_0061/16/259:267GNRA related
homologous
HL_5J7L_006
NA
HL_7N2C_0071/16/296:301GNRA
homologous
HL_5J7L_007
NA
HL_7N2C_0081/16/320:333No text annotation
homologous
HL_5J7L_008
NA
HL_7N2C_0091/16/342:347UNCG
homologous
HL_6CZR_080
NA
HL_7N2C_0101/16/379:384GNRA
homologous
HL_6CZR_081
NA
HL_7N2C_0111/16/419:424UNCG
homologous
HL_4LFB_011
HL_61337.1
HL_7N2C_0121/16/462:470GNRA wlth extra near cWW
homologous
HL_5J7L_012
NA
HL_7N2C_1101/16/522:527GNRA variation
homologous
HL_5J7L_205
NA
HL_7N2C_0141/16/617:623GNRA-like with tWH
homologous
HL_4LFB_014
HL_92337.1
HL_7N2C_0151/16/689:698No text annotation
homologous
HL_5J7L_015
NA
HL_7N2C_0161/16/726:731GNRA
homologous
HL_5J7L_016
NA
HL_7N2C_0171/16/786:796No text annotation
homologous
HL_5J7L_017
NA
HL_7N2C_0191/16/862:867GNRA
homologous
HL_4LFB_019
HL_34789.1
HL_7N2C_0201/16/897:902GNRA
homologous
HL_4LFB_020
HL_34789.1
HL_7N2C_0211/16/963:972No text annotation
homologous
HL_4LFB_021
HL_97521.1
HL_7N2C_0221/16/1012:1017GNRA
homologous
HL_4LFB_022
HL_34789.1
HL_7N2C_0241/16/1076:1081GNRA
homologous
HL_5J7L_023
NA
HL_7N2C_0251/16/1089:1096T-loop related
homologous
HL_4LFB_025
HL_63894.1
HL_7N2C_0271/16/1165:1171GNRA
homologous
HL_5J7L_026
NA
HL_7N2C_0281/16/1265:1270GNRA
homologous
HL_5J7L_027
NA
HL_7N2C_0291/16/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_5J7L_028
NA
HL_7N2C_0301/16/1356:1366No text annotation
homologous
HL_5J7L_029
NA
HL_7N2C_0311/16/1449:1454UNCG
homologous
HL_5J7L_030
NA
HL_7N2C_0321/16/1515:1520GNRA
homologous
HL_6CZR_103
NA
HL_7N2C_0331/23/59:68No text annotation
homologous
HL_5J7L_134
NA
HL_7N2C_0341/23/87:95No text annotation
homologous
HL_5J7L_135
NA
HL_7N2C_0351/23/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.6
HL_7N2C_0361/23/137:142UNCG
geometric
HL_6QN3_001
NA
HL_7N2C_0371/23/158:168No text annotation
homologous
HL_5J7L_138
NA
HL_7N2C_0381/23/194:201No text annotation
homologous
HL_4WF9_006
HL_48677.1
HL_7N2C_0391/23/225:230No text annotation
homologous
HL_5J7L_140
NA
HL_7N2C_0401/23/246:252No text annotation
homologous
HL_5J7L_141
NA
HL_7N2C_0411/23/305:312T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
NA
HL_7N2C_0421/23/319:323No text annotation
homologous
HL_5J7L_143
NA
HL_7N2C_0431/23/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_7N2C_0441/23/382:392No text annotation
homologous
HL_5J7L_145
NA
HL_7N2C_0451/23/410:417Pseudoknot geometry
homologous
HL_5J7L_146
NA
HL_7N2C_0461/23/462:467GNRA
homologous
HL_4WF9_015
HL_34789.1
HL_7N2C_0471/23/487:493GNRA
homologous
HL_5J7L_148
NA
HL_7N2C_0481/23/544:549No text annotation
homologous
HL_7RQB_017
NA
HL_7N2C_0491/23/566:575T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
NA
HL_7N2C_0501/23/611:617GNRA
geometric
HL_3DIL_003
HL_48677.1
HL_7N2C_0511/23/629:634GNRA
homologous
HL_5J7L_152
NA
HL_7N2C_0521/23/641:647No text annotation
homologous
HL_5J7L_153
NA
HL_7N2C_0531/23/711:720No text annotation
HL_7N2C_0541/23/744:753No text annotation
homologous
HL_5J7L_155
NA
HL_7N2C_0551/23/779:785No text annotation
homologous
HL_7RQB_024
NA
HL_7N2C_0561/23/826:831No text annotation
homologous
HL_5J7L_157
NA
HL_7N2C_1111/23/955:962GNRA
homologous
HL_5J7L_211
NA
HL_7N2C_0591/23/978:985No text annotation
homologous
HL_5J7L_160
NA
HL_7N2C_0601/23/1064:1074No text annotation
homologous
HL_6PRV_001
HL_20174.1
HL_7N2C_0611/23/1092:1099GNRA wlth tandem sheared
homologous
HL_6PRV_002
HL_98423.1
HL_7N2C_0631/23/1222:1227GNRA
homologous
HL_5J7L_164
NA
HL_7N2C_0641/23/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
NA
HL_7N2C_0651/23/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
NA
HL_7N2C_0661/23/1363:1368GNRA
homologous
HL_5J7L_167
NA
HL_7N2C_0671/23/1389:1398No text annotation
homologous
HL_5J7L_168
NA
HL_7N2C_0681/23/1451:1459Mini UNCG with extended bulge
homologous
HL_5J7L_169
NA
HL_7N2C_0691/23/1492:1498Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
NA
HL_7N2C_0711/23/1565:1568Mini UNCG
homologous
HL_5J7L_172
NA
HL_7N2C_0721/23/1612:1619No text annotation
homologous
HL_5J7L_173
NA
HL_7N2C_0731/23/1630:1636GNRA
homologous
HL_5J7L_174
NA
HL_7N2C_0741/23/1691:1696No text annotation
geometric
HL_7RQB_042
NA
HL_7N2C_0751/23/1728:1731Mini UNCG
geometric
HL_4V88_192
NA
HL_7N2C_0761/23/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_7N2C_0771/23/1777:1787No text annotation
homologous
HL_5J7L_178
NA
HL_7N2C_0781/23/1806:1811GNRA related
homologous
HL_5J7L_179
NA
HL_7N2C_0791/23/1868:1873GNRA
geometric
HL_6AZ4_001
NA
HL_7N2C_0801/23/1910:1920No text annotation
homologous
HL_5J7L_181
NA
HL_7N2C_0811/23/1949:1957No text annotation
homologous
HL_5J7L_182
NA
HL_7N2C_0821/23/2027:2036No text annotation
homologous
HL_5J7L_183
NA
HL_7N2C_0841/23/2209:2215No text annotation
homologous
HL_5J7L_185
NA
HL_7N2C_0851/23/2248:2256No text annotation
homologous
HL_7RQB_053
NA
HL_7N2C_0861/23/2264:2276No text annotation
homologous
HL_5J7L_187
NA
HL_7N2C_1151/23/2304:2312No text annotation
homologous
HL_9DFE_198
HL_02452.1
HL_7N2C_0881/23/2324:2331Pseudoknot geometry
homologous
HL_7RQB_056
NA
HL_7N2C_0891/23/2356:2361GNRA
homologous
HL_5J7L_190
NA
HL_7N2C_0901/23/2374:2379GNRA
homologous
HL_5J7L_191
NA
HL_7N2C_0911/23/2404:2413No text annotation
homologous
HL_5J7L_192
NA
HL_7N2C_0921/23/2471:2479No text annotation
homologous
HL_5J7L_193
NA
HL_7N2C_0931/23/2528:2535GNRA variation
homologous
HL_5J7L_194
NA
HL_7N2C_0941/23/2551:2557No text annotation
homologous
HL_5J7L_195
NA
HL_7N2C_0951/23/2594:2599GNRA
homologous
HL_5J7L_196
NA
HL_7N2C_0961/23/2658:2663GNRA
geometric
HL_4V9F_066
HL_34789.1
HL_7N2C_0971/23/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
NA
HL_7N2C_0981/23/2745:2759No text annotation
homologous
HL_5J7L_199
NA
HL_7N2C_0991/23/2795:2801UNCG variation
homologous
HL_5J7L_200
NA
HL_7N2C_1001/23/2819:2827No text annotation
homologous
HL_5J7L_201
NA
HL_7N2C_1011/23/2856:2861GNRA
homologous
HL_7A0S_068
HL_34789.1
HL_7N2C_1131/5/34:48No text annotation
homologous
HL_9DFE_067
HL_97756.3
HL_7N2C_1021/5/38:44No text annotation
geometric
HL_5NFV_001
HL_69752.3
HL_7N2C_1031/5/86:90Mini UNCG
homologous
HL_5J7L_204
NA
HL_7N2C_1041/Dt/13:22tRNA D-loop
homologous
HL_6JXM_001
NA
HL_7N2C_1161/Dt/31:39tRNA anticodon loop
homologous
HL_5J8B_118
NA
HL_7N2C_1061/Dt/53:61T-loop with 2 stacked bulged bases
homologous
HL_4RDX_003
NA
HL_7N2C_1071/Pt/13:22tRNA D-loop
homologous
HL_6JXM_001
NA
HL_7N2C_1141/Pt/31:39tRNA anticodon loop
homologous
HL_1FIR_005
NA
HL_7N2C_1091/Pt/53:61T-loop with 2 stacked bulged bases
homologous
HL_6CFJ_108
HL_33597.1

Problematic loops

#loop idProblemSequence
HL_7N2C_002No text annotation
HL_7N2C_013No text annotation
HL_7N2C_018No text annotation
HL_7N2C_023No text annotation
HL_7N2C_026No text annotation
HL_7N2C_057No text annotation
HL_7N2C_058No text annotation
HL_7N2C_112No text annotation
HL_7N2C_062No text annotation
HL_7N2C_070No text annotation
HL_7N2C_083UNCG
HL_7N2C_087No text annotation
HL_7N2C_105No text annotation
HL_7N2C_108No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7N2C_0011/16/30:32,
1/16/552:553		Single bulged G
homologous
IL_5J7L_001
NA
IL_7N2C_0021/16/44:45,
1/16/396:398		Single bulged A
homologous
IL_5J7L_002
NA
IL_7N2C_0031/16/47:52,
1/16/359:361		No text annotation
homologous
IL_5J7L_003
NA
IL_7N2C_0041/16/54:56,
1/16/356:357		Minor groove platform
homologous
IL_4LFB_004
IL_34520.1
IL_7N2C_0051/16/63:66,
1/16/103:104		Multiple bulged bases
homologous
IL_5J7L_005
NA
IL_7N2C_0061/16/67:69,
1/16/99:102		Minor groove platform with extra cWW
homologous
IL_5J7L_006
NA
IL_7N2C_0071/16/70:73,
1/16/97:98		Minor groove platform
homologous
IL_5J7L_007
NA
IL_7N2C_0091/16/128:131,
1/16/231:233		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
NA
IL_7N2C_0101/16/132:136,
1/16/227:230		Minor groove platform related
homologous
IL_5J7L_010
NA
IL_7N2C_0111/16/144:146,
1/16/176:178		Isolated cWH basepair
homologous
IL_5J7L_011
NA
IL_7N2C_0121/16/147:153,
1/16/168:175		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
NA
IL_7N2C_0131/16/242:247,
1/16/277:284		Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
NA
IL_7N2C_0141/16/249:252,
1/16/274:275		No text annotation
homologous
IL_4LFB_012
IL_22002.1
IL_7N2C_0151/16/292:293,
1/16/304:308		C-loop
homologous
IL_6CZR_125
NA
IL_7N2C_0161/16/367:369,
1/16/392:393		Single bulged U
homologous
IL_5J7L_017
NA
IL_7N2C_0171/16/371:375,
1/16/389:390		C-loop
geometric
IL_5J7L_018
NA
IL_7N2C_0181/16/375:376,
1/16/387:389		Single bulged G
homologous
IL_5J7L_019
NA
IL_7N2C_0201/16/440:442,
1/16/492:497		No text annotation
homologous
IL_5J7L_021
NA
IL_7N2C_0211/16/446:450,
1/16/483:488		tSH-tHW-tWW
geometric
IL_5J7L_022
NA
IL_7N2C_0221/16/450:455,
1/16/477:483		No text annotation
homologous
IL_5J7L_023
NA
IL_7N2C_0231/16/504:511,
1/16/540:541		SSU/LSU pseudoknot
homologous
IL_5J7L_024
NA
IL_7N2C_0241/16/515:521,
1/16/528:536		Kink-turn related
homologous
IL_5J7L_025
NA
IL_7N2C_0251/16/569:575,
1/16/880:881		No text annotation
homologous
IL_5J7L_026
NA
IL_7N2C_0261/16/580:584,
1/16/757:761		tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_7N2C_0271/16/594:596,
1/16/644:645		Major groove platform
homologous
IL_5J7L_028
NA
IL_7N2C_0281/16/597:598,
1/16/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_73108.1
IL_7N2C_0291/16/605:612,
1/16/628:633		No text annotation
homologous
IL_5J7L_030
NA
IL_7N2C_0301/16/654:655,
1/16/751:754		Major groove platform; stack outside cWW
homologous
IL_4LFB_027
IL_74641.1
IL_7N2C_0311/16/659:660,
1/16/745:747		Single stack bend
homologous
IL_5J7L_032
NA
IL_7N2C_0321/16/662:666,
1/16/740:743		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
NA
IL_7N2C_1801/16/673:677,
1/16/713:717		Triple non-canonical cWW pairs
homologous
IL_4LFB_065
IL_71154.1
IL_7N2C_0341/16/684:688,
1/16/699:706		Kink-turn
homologous
IL_5J7L_035
NA
IL_7N2C_0351/16/774:778,
1/16/804:805		Left turn
homologous
IL_4LFB_032
IL_29346.3
IL_7N2C_0361/16/779:783,
1/16/799:803		tSH-tHW-tHS
homologous
IL_4LFB_033
IL_05821.1
IL_7N2C_0371/16/887:894,
1/16/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
NA
IL_7N2C_0381/16/922:923,
1/16/1393:1395		Single bulged A
homologous
IL_6CZR_147
NA
IL_7N2C_0391/16/925:927,
1/16/1390:1391		Single bulged G
homologous
IL_5J7L_040
NA
IL_7N2C_0401/16/933:935,
1/16/1380:1384		Minor groove platform
homologous
IL_5J7L_041
NA
IL_7N2C_0411/16/953:954,
1/16/1226:1228		Minor groove platform
homologous
IL_5J7L_042
NA
IL_7N2C_0421/16/993:997,
1/16/1044:1045		Minor groove platform
homologous
IL_5J7L_043
NA
IL_7N2C_0431/16/998:999,
1/16/1041:1043		Single stack bend
homologous
IL_5J7L_044
NA
IL_7N2C_0441/16/1048:1050,
1/16/1208:1209		Single bulged U
homologous
IL_5J7L_046
NA
IL_7N2C_0451/16/1052:1056,
1/16/1204:1206		Isolated cWS basepair
homologous
IL_4LFB_044
IL_82453.1
IL_7N2C_0461/16/1057:1058,
1/16/1199:1203		Minor groove platform
homologous
IL_5J7L_048
NA
IL_7N2C_0471/16/1060:1061,
1/16/1195:1197		Single bulged A
geometric
IL_5J7L_049
NA
IL_7N2C_0481/16/1061:1063,
1/16/1193:1195		Isolated non-canonical cWW pair
homologous
IL_5J7L_050
NA
IL_7N2C_0491/16/1124:1128,
1/16/1144:1149		No text annotation
homologous
IL_5J7L_051
NA
IL_7N2C_0501/16/1129:1132,
1/16/1142:1143		Minor groove platform
homologous
IL_5J7L_052
NA
IL_7N2C_0511/16/1158:1161,
1/16/1175:1181		No text annotation
geometric
IL_5J7L_053
NA
IL_7N2C_0521/16/1247:1253,
1/16/1284:1290		No text annotation
homologous
IL_5J7L_054
NA
IL_7N2C_0531/16/1255:1258,
1/16/1277:1282		180 degree turn
homologous
IL_5J7L_055
NA
IL_7N2C_0541/16/1259:1263,
1/16/1272:1276		Double sheared with non-canonical cWW
homologous
IL_5J7L_056
NA
IL_7N2C_0551/16/1303:1308,
1/16/1329:1334		No text annotation
geometric
IL_4LFB_055
IL_57885.1
IL_7N2C_0561/16/1399:1401,
1/16/1501:1504		No text annotation
homologous
IL_5J7L_058
NA
IL_7N2C_0571/16/1401:1404,
1/16/1497:1501		No text annotation
geometric
IL_4V88_464
NA
IL_7N2C_1811/16/1405:1407,
1/16/1494:1496		Isolated non-canonical cWW pair
homologous
IL_5J7L_363
NA
IL_7N2C_1821/16/1407:1409,
1/16/1491:1494		No text annotation
geometric
IL_8UO6_002
NA
IL_7N2C_0591/16/1412:1414,
1/16/1486:1488		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
NA
IL_7N2C_0601/16/1416:1419,
1/16/1481:1484		Double sheared
homologous
IL_5J7L_062
NA
IL_7N2C_0611/16/1430:1435,
1/16/1466:1470		Triple sheared related
homologous
IL_5J7L_063
NA
IL_7N2C_0621/16/1440:1442,
1/16/1460:1461		Single bulged A
geometric
IL_7RQB_062
NA
IL_7N2C_0631/16/1445:1448,
1/16/1455:1457		No text annotation
homologous
IL_5J7L_065
NA
IL_7N2C_0641/23/24:30,
1/23/510:516		Triple sheared with non-canonical cWW
geometric
IL_5J7L_245
NA
IL_7N2C_0651/23/36:37,
1/23/442:444		Single bulged A
homologous
IL_7RQB_002
NA
IL_7N2C_0661/23/43:44,
1/23/434:436		Minor groove platform
homologous
IL_5J7L_247
NA
IL_7N2C_0671/23/81:85,
1/23/97:105		No text annotation
homologous
IL_5J7L_248
NA
IL_7N2C_0681/23/183:184,
1/23/212:214		Single stack bend
homologous
IL_5J7L_249
NA
IL_7N2C_0691/23/188:194,
1/23/201:208		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_250
NA
IL_7N2C_0701/23/239:245,
1/23/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
NA
IL_7N2C_0711/23/269:271,
1/23/366:370		No text annotation
homologous
IL_5J7L_252
NA
IL_7N2C_0721/23/274:281,
1/23/359:363		No text annotation
homologous
IL_5J7L_253
NA
IL_7N2C_0731/23/293:295,
1/23/343:347		No text annotation
homologous
IL_5J7L_254
NA
IL_7N2C_0741/23/481:484,
1/23/496:509		No text annotation
geometric
IL_5J7L_255
NA
IL_7N2C_0751/23/536:539,
1/23/554:557		Double sheared
homologous
IL_5J7L_256
NA
IL_7N2C_0761/23/564:566,
1/23/575:577		Isolated non-canonical cWW pair
homologous
IL_5J7L_257
NA
IL_7N2C_0771/23/606:610,
1/23/618:622		AAA cross-strand stack
homologous
IL_5J7L_258
NA
IL_7N2C_0781/23/672:674,
1/23/806:808		No text annotation
homologous
IL_7RQB_017
NA
IL_7N2C_0791/23/674:678,
1/23/799:806		tHW-tHW cross-strand stack
geometric
IL_5J7L_260
NA
IL_7N2C_0801/23/697:698,
1/23/763:765		Single bulged A
geometric
IL_4V9F_025
IL_14190.1
IL_7N2C_0811/23/702:703,
1/23/728:730		Single bulged G
homologous
IL_5J7L_262
NA
IL_7N2C_0821/23/703:707,
1/23/724:728		Triple sheared
geometric
IL_7RQB_021
NA
IL_7N2C_0831/23/738:740,
1/23/757:758		Major groove platform
homologous
IL_5J7L_264
NA
IL_7N2C_0841/23/775:777,
1/23/787:791		Multiple bulged bases
geometric
IL_5J7L_265
NA
IL_7N2C_0851/23/844:847,
1/23/933:934		90 degree turn
homologous
IL_5J7L_267
NA
IL_7N2C_1831/23/844:848,
1/23/930:934		No text annotation
homologous
IL_5J7L_399
NA
IL_7N2C_0861/23/847:848,
1/23/930:933		Stack outside cWW
geometric
IL_5J7L_268
NA
IL_7N2C_0871/23/850:851,
1/23/926:928		Single stack bend
homologous
IL_5J7L_269
NA
IL_7N2C_0881/23/856:862,
1/23/915:921		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5J7L_270
NA
IL_7N2C_0891/23/862:863,
1/23/913:915		Single bulged G
homologous
IL_5J7L_271
NA
IL_7N2C_0901/23/864:868,
1/23/909:912		C-loop with bulged stacked A's
homologous
IL_5J7L_272
NA
IL_7N2C_0911/23/870:872,
1/23/905:907		Isolated non-canonical cWW pair
homologous
IL_5J7L_273
NA
IL_7N2C_0921/23/875:879,
1/23/898:902		Double sheared with non-canonical cWW
homologous
IL_5J7L_274
NA
IL_7N2C_0941/23/994:996,
1/23/1159:1160		Single bulged C
homologous
IL_7RQB_035
NA
IL_7N2C_0951/23/998:1002,
1/23/1153:1157		UAA/GAN
homologous
IL_5J7L_277
NA
IL_7N2C_0961/23/1004:1011,
1/23/1150:1151		SSU/LSU pseudoknot
homologous
IL_5J7L_278
NA
IL_7N2C_0971/23/1011:1013,
1/23/1149:1150		Single bulged U
geometric
IL_5J7L_279
NA
IL_7N2C_0981/23/1018:1024,
1/23/1140:1144		Kink-turn related
homologous
IL_5J7L_280
NA
IL_7N2C_0991/23/1024:1030,
1/23/1124:1140		No text annotation
geometric
IL_5J7L_281
NA
IL_7N2C_1001/23/1031:1034,
1/23/1121:1123		Isolated non-canonical cWW pair
homologous
IL_5J7L_282
NA
IL_7N2C_1011/23/1038:1041,
1/23/1114:1117		Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
NA
IL_7N2C_1021/23/1043:1051,
1/23/1108:1112		Kink-turn
homologous
IL_5J7L_284
NA
IL_7N2C_1031/23/1059:1062,
1/23/1076:1079		No text annotation
homologous
IL_5J7L_285
NA
IL_7N2C_1041/23/1087:1090,
1/23/1101:1102		Major groove platform
geometric
IL_4V9F_044
IL_48076.7
IL_7N2C_1051/23/1196:1198,
1/23/1247:1250		Isolated cWS basepair
homologous
IL_4WF9_044
IL_42997.4
IL_7N2C_1061/23/1202:1206,
1/23/1240:1243		No text annotation
homologous
IL_5J7L_287
NA
IL_7N2C_1071/23/1208:1215,
1/23/1234:1238		Kink-turn
homologous
IL_5J7L_288
NA
IL_7N2C_1081/23/1262:1269,
1/23/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_7N2C_1091/23/1310:1313,
1/23/1603:1604		Major groove platform; stack outside cWW
homologous
IL_5J7L_290
NA
IL_7N2C_1101/23/1319:1323,
1/23/1331:1333		C-loop
homologous
IL_5J7L_291
NA
IL_7N2C_1111/23/1351:1355,
1/23/1376:1380		UAA/GAN
homologous
IL_5J7L_292
NA
IL_7N2C_1121/23/1357:1361,
1/23/1370:1374		tSH-tHW-tHS
homologous
IL_5J7L_293
NA
IL_7N2C_1131/23/1415:1416,
1/23/1582:1587		No text annotation
homologous
IL_5J7L_294
NA
IL_7N2C_1141/23/1417:1421,
1/23/1577:1581		UAA/GAN
homologous
IL_5J7L_295
NA
IL_7N2C_1151/23/1432:1435,
1/23/1557:1561		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
NA
IL_7N2C_1161/23/1437:1440,
1/23/1551:1555		tSH-tHW
homologous
IL_5J7L_297
NA
IL_7N2C_1171/23/1450:1451,
1/23/1459:1461		Single bulged U
geometric
IL_5J7L_298
NA
IL_7N2C_1181/23/1468:1471,
1/23/1520:1524		No text annotation
homologous
IL_5J7L_299
NA
IL_7N2C_1191/23/1474:1478,
1/23/1513:1517		tSH-tHW-tHS
homologous
IL_5J7L_300
NA
IL_7N2C_1201/23/1481:1482,
1/23/1507:1510		180 degree turn
homologous
IL_5J7L_301
NA
IL_7N2C_1211/23/1489:1491,
1/23/1499:1500		Single bulged A
homologous
IL_5J7L_302
NA
IL_7N2C_1221/23/1526:1529,
1/23/1542:1546		UAA/GAN variation
homologous
IL_5J7L_303
NA
IL_7N2C_1231/23/1651:1656,
1/23/2004:2006		No text annotation
homologous
IL_5J7L_304
NA
IL_7N2C_1241/23/1663:1665,
1/23/1995:1997		Isolated tWW turn
homologous
IL_5J7L_305
NA
IL_7N2C_1251/23/1666:1669,
1/23/1993:1994		Major groove platform; stack outside cWW
geometric
IL_7RQB_066
NA
IL_7N2C_1841/23/1666:1674,
1/23/1990:1994		No text annotation
homologous
IL_5J7L_386
NA
IL_7N2C_1261/23/1669:1674,
1/23/1990:1993		Intercalated tWH
homologous
IL_5J7L_307
NA
IL_7N2C_1271/23/1686:1691,
1/23/1696:1702		tSH-tSH-tHH-tHS
homologous
IL_5J7L_308
NA
IL_7N2C_1281/23/1712:1718,
1/23/1742:1746		6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
NA
IL_7N2C_1291/23/1720:1724,
1/23/1736:1740		Triple sheared
homologous
IL_5J7L_310
NA
IL_7N2C_1301/23/1727:1728,
1/23/1731:1733		Single bulged C
homologous
IL_5J7L_311
NA
IL_7N2C_1311/23/1770:1771,
1/23/1980:1982		Single bulged A
homologous
IL_5J7L_312
NA
IL_7N2C_1321/23/1798:1804,
1/23/1813:1821		Kink-turn related
homologous
IL_7A0S_065
IL_17069.6
IL_7N2C_1331/23/1837:1840,
1/23/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_7N2C_1341/23/1841:1842,
1/23/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
NA
IL_7N2C_1351/23/1846:1849,
1/23/1893:1894		Major groove minor groove platform; mini C-loop
homologous
IL_4WF9_072
IL_73108.1
IL_7N2C_1851/23/1851:1860,
1/23/1882:1891		No text annotation
homologous
IL_5J7L_387
NA
IL_7N2C_1361/23/1864:1867,
1/23/1874:1878		UAA/GAN related
homologous
IL_5J7L_317
NA
IL_7N2C_1371/23/1933:1934,
1/23/1964:1967		Bulged stacked bases
homologous
IL_5J7L_318
NA
IL_7N2C_1381/23/1934:1945,
1/23/1961:1964		No text annotation
geometric
IL_7A0S_072
IL_04332.3
IL_7N2C_1391/23/2050:2052,
1/23/2617:2618		Major groove platform
homologous
IL_5J7L_320
NA
IL_7N2C_1401/23/2054:2056,
1/23/2612:2615		No text annotation
homologous
IL_5J7L_321
NA
IL_7N2C_1861/23/2067:2069,
1/23/2442:2443		Single bulged U
homologous
IL_7A0S_075
IL_97561.1
IL_7N2C_1431/23/2070:2071,
1/23/2438:2441		Minor groove platform
geometric
IL_5TBW_094
NA
IL_7N2C_1441/23/2081:2083,
1/23/2236:2239		Isolated tHS basepair with bulges
homologous
IL_5J7L_325
NA
IL_7N2C_1451/23/2085:2087,
1/23/2232:2234		Isolated non-canonical cWW pair
homologous
IL_5J7L_326
NA
IL_7N2C_1471/23/2108:2110,
1/23/2179:2181		Isolated non-canonical cWW pair
homologous
IL_3U4M_001
IL_71625.1
IL_7N2C_1481/23/2110:2116,
1/23/2164:2179		No text annotation
IL_7N2C_1871/23/2110:2127,
1/23/2161:2179		No text annotation
IL_7N2C_1511/23/2202:2204,
1/23/2220:2221		Single bulged U
homologous
IL_5J7L_331
NA
IL_7N2C_1521/23/2297:2299,
1/23/2317:2321		No text annotation
homologous
IL_5J7L_332
NA
IL_7N2C_1531/23/2350:2353,
1/23/2364:2367		Double sheared
homologous
IL_7RQB_089
NA
IL_7N2C_1541/23/2401:2403,
1/23/2414:2415		No text annotation
IL_7N2C_1881/23/2453:2454,
1/23/2498:2500		Single stack bend
homologous
IL_5J7L_391
NA
IL_7N2C_1891/23/2454:2455,
1/23/2496:2498		Major groove platform
homologous
IL_5J7L_392
NA
IL_7N2C_1901/23/2457:2459,
1/23/2493:2494		Major groove platform
homologous
IL_5J7L_393
NA
IL_7N2C_1571/23/2459:2461,
1/23/2489:2493		Major groove minor groove platform with extra cWW
geometric
IL_7A0S_086
IL_36931.1
IL_7N2C_1581/23/2466:2470,
1/23/2480:2484		Double sheared with non-canonical cWW
homologous
IL_5J7L_338
NA
IL_7N2C_1911/23/2507:2508,
1/23/2580:2582		Major groove platform
homologous
IL_5J7L_394
NA
IL_7N2C_1601/23/2510:2512,
1/23/2574:2578		Isolated non-canonical cWW with bulges
homologous
IL_5J7L_340
NA
IL_7N2C_1611/23/2512:2513,
1/23/2571:2574		No text annotation
geometric
IL_5J7L_341
NA
IL_7N2C_1621/23/2522:2523,
1/23/2540:2543		Major groove platform with intercalation
homologous
IL_5J7L_342
NA
IL_7N2C_1641/23/2591:2592,
1/23/2601:2603		Single bulged A
homologous
IL_5J7L_344
NA
IL_7N2C_1651/23/2636:2640,
1/23/2774:2782		tSH-tHS-tHW
homologous
IL_5J7L_345
NA
IL_7N2C_1661/23/2652:2658,
1/23/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_5J7L_346
NA
IL_7N2C_1671/23/2680:2684,
1/23/2725:2727		C-loop
homologous
IL_5J7L_347
NA
IL_7N2C_1681/23/2687:2691,
1/23/2718:2722		UAA/GAN related, with intercalation
homologous
IL_5J7L_348
NA
IL_7N2C_1691/23/2695:2696,
1/23/2711:2714		Multiple bulged bases
homologous
IL_5J7L_349
NA
IL_7N2C_1701/23/2737:2742,
1/23/2762:2767		UAA/GAN with extra cWW
homologous
IL_5J7L_350
NA
IL_7N2C_1711/23/2806:2811,
1/23/2889:2892		No text annotation
geometric
IL_5J7L_351
NA
IL_7N2C_1721/23/2838:2839,
1/23/2878:2880		Major groove intercalation
homologous
IL_5J7L_352
NA
IL_7N2C_1731/23/2843:2846,
1/23/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
NA
IL_7N2C_1741/23/2847:2852,
1/23/2865:2869		tHS double platform
homologous
IL_5J7L_354
NA
IL_7N2C_1751/5/17:18,
1/5/65:67		Major groove intercalation
homologous
IL_7RQB_111
NA
IL_7N2C_1761/5/23:28,
1/5/56:60		No text annotation
homologous
IL_5J7L_356
NA
IL_7N2C_1771/5/30:31,
1/5/51:54		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_357
NA
IL_7N2C_1781/5/34:38,
1/5/44:48		Symmetric double minor groove platform
homologous
IL_4V9F_104
IL_58103.12
IL_7N2C_1791/5/71:79,
1/5/97:105		Bacterial 5S Loop E
homologous
IL_5J7L_359
NA

Problematic loops

#loop idProblemSequence
IL_7N2C_192Single bulged G
IL_7N2C_008Single bulged G, near cWW
IL_7N2C_019No text annotation
IL_7N2C_033No text annotation
IL_7N2C_058Partly complementary
IL_7N2C_093No text annotation
IL_7N2C_141No text annotation
IL_7N2C_142No text annotation
IL_7N2C_146Isolated non-canonical cWW pair
IL_7N2C_149No text annotation
IL_7N2C_150Kink-turn
IL_7N2C_155No text annotation
IL_7N2C_156No text annotation
IL_7N2C_159No text annotation
IL_7N2C_163No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7N2C_0011/16/46:47,
1/16/361:367,
1/16/393:395		No text annotation
homologous
J3_5J7L_001
NA
J3_7N2C_0271/16/46:52,
1/16/359:367,
1/16/393:395		No text annotation
homologous
J3_5J7L_050
NA
J3_7N2C_0021/16/586:588,
1/16/651:654,
1/16/754:755		No text annotation
homologous
J3_5J7L_002
NA
J3_7N2C_0281/16/586:588,
1/16/651:655,
1/16/751:755		No text annotation
homologous
J3_5J7L_051
NA
J3_7N2C_0031/16/672:673,
1/16/717:725,
1/16/732:734		No text annotation
homologous
J3_5J7L_003
NA
J3_7N2C_0041/16/826:829,
1/16/857:861,
1/16/868:874		No text annotation
homologous
J3_5J7L_004
NA
J3_7N2C_0291/16/936:939,
1/16/1344:1350,
1/16/1372:1379		No text annotation
homologous
J3_4LFB_002
J3_85722.1
J3_7N2C_0051/16/943:946,
1/16/1235:1237,
1/16/1337:1340		No text annotation
homologous
J3_5J7L_005
NA
J3_7N2C_0061/16/955:962,
1/16/973:984,
1/16/1221:1225		No text annotation
homologous
J3_5J7L_006
NA
J3_7N2C_0071/16/990:993,
1/16/1045:1047,
1/16/1210:1215		No text annotation
homologous
J3_5J7L_007
NA
J3_7N2C_0301/16/990:997,
1/16/1044:1047,
1/16/1210:1215		No text annotation
homologous
J3_5J7L_053
NA
J3_7N2C_0091/16/1063:1068,
1/16/1107:1113,
1/16/1187:1193		No text annotation
homologous
J3_5J7L_008
NA
J3_7N2C_0311/16/1073:1074,
1/16/1083:1086,
1/16/1099:1102		No text annotation
homologous
J3_4LFB_017
J3_11018.1
J3_7N2C_0111/16/1116:1118,
1/16/1155:1158,
1/16/1181:1184		No text annotation
homologous
J3_5J7L_010
NA
J3_7N2C_0321/16/1116:1118,
1/16/1155:1161,
1/16/1175:1184		No text annotation
homologous
J3_5J7L_054
NA
J3_7N2C_0121/16/1237:1241,
1/16/1296:1303,
1/16/1334:1337		No text annotation
homologous
J3_5J7L_011
NA
J3_7N2C_0131/23/30:31,
1/23/474:481,
1/23/509:510		No text annotation
homologous
J3_5J7L_036
NA
J3_7N2C_0331/23/30:31,
1/23/474:484,
1/23/496:510		No text annotation
homologous
J3_5J7L_066
NA
J3_7N2C_0341/23/32:35,
1/23/445:461,
1/23/468:473		No text annotation
homologous
J3_5J7L_067
NA
J3_7N2C_0141/23/56:57,
1/23/70:76,
1/23/110:114		No text annotation
homologous
J3_5J7L_037
NA
J3_7N2C_0351/23/297:301,
1/23/316:325,
1/23/337:341		No text annotation
homologous
J3_5J7L_068
NA
J3_7N2C_0151/23/683:689,
1/23/773:775,
1/23/791:794		No text annotation
homologous
J3_5J7L_038
NA
J3_7N2C_0161/23/698:700,
1/23/732:736,
1/23/760:763		No text annotation
homologous
J3_5J7L_039
NA
J3_7N2C_0171/23/1055:1057,
1/23/1081:1087,
1/23/1102:1104		No text annotation
homologous
J3_6PRV_001
J3_37832.1
J3_7N2C_0181/23/1298:1303,
1/23/1625:1627,
1/23/1639:1642		No text annotation
homologous
J3_5J7L_041
NA
J3_7N2C_0191/23/1306:1309,
1/23/1605:1611,
1/23/1620:1622		No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_7N2C_0201/23/1344:1349,
1/23/1382:1385,
1/23/1402:1403		No text annotation
homologous
J3_5J7L_043
NA
J3_7N2C_0361/23/1424:1429,
1/23/1564:1565,
1/23/1568:1574		No text annotation
homologous
J3_5J7L_069
NA
J3_7N2C_0211/23/2091:2093,
1/23/2196:2200,
1/23/2223:2228		Kink-turn 3-way junction
homologous
J3_5J7L_044
NA
J3_7N2C_0371/23/2282:2284,
1/23/2384:2395,
1/23/2421:2427		No text annotation
homologous
J3_5J7L_070
NA
J3_7N2C_0221/23/2295:2297,
1/23/2321:2323,
1/23/2332:2337		No text annotation
homologous
J3_5J7L_045
NA
J3_7N2C_0381/23/2295:2299,
1/23/2317:2323,
1/23/2332:2337		No text annotation
homologous
J3_5J7L_071
NA
J3_7N2C_0231/23/2517:2520,
1/23/2545:2547,
1/23/2561:2567		No text annotation
homologous
J3_5J7L_046
NA
J3_7N2C_0241/23/2789:2791,
1/23/2805:2806,
1/23/2892:2894		No text annotation
homologous
J3_5J7L_047
NA
J3_7N2C_0251/23/2812:2815,
1/23/2831:2836,
1/23/2882:2888		No text annotation
homologous
J3_5J7L_048
NA
J3_7N2C_0261/5/10:16,
1/5/68:70,
1/5/106:110		No text annotation
homologous
J3_5J7L_049
NA
J4_7N2C_0011/16/115:122,
1/16/239:240,
1/16/286:289,
1/16/311:312		No text annotation
homologous
J4_5J7L_001
NA
J4_7N2C_0021/16/142:144,
1/16/178:184,
1/16/193:198,
1/16/219:221		No text annotation
homologous
J4_5J7L_002
NA
J4_7N2C_0031/16/575:577,
1/16/764:769,
1/16/810:821,
1/16/879:880		No text annotation
homologous
J4_5J7L_003
NA
J4_7N2C_0041/23/268:269,
1/23/370:375,
1/23/399:406,
1/23/421:424		No text annotation
homologous
J4_5J7L_018
NA
J4_7N2C_0051/23/297:301,
1/23/316:319,
1/23/323:325,
1/23/337:341		No text annotation
homologous
J4_5J7L_019
NA
J4_7N2C_0061/23/601:604,
1/23/624:628,
1/23/635:638,
1/23/650:656		No text annotation
homologous
J4_5J7L_020
NA
J4_7N2C_0071/23/1270:1276,
1/23/1294:1295,
1/23/1645:1648,
1/23/2009:2010		No text annotation
homologous
J4_5J7L_021
NA
J4_7N2C_0081/23/1310:1314,
1/23/1338:1343,
1/23/1404:1405,
1/23/1597:1604		No text annotation
homologous
J4_5J7L_022
NA
J4_7N2C_0091/23/1313:1314,
1/23/1338:1343,
1/23/1404:1405,
1/23/1597:1603		No text annotation
homologous
J4_5J7L_023
NA
J4_7N2C_0101/23/1444:1445,
1/23/1466:1467,
1/23/1525:1526,
1/23/1546:1547		No text annotation
homologous
J4_5J7L_024
NA
J4_7N2C_0111/23/1772:1776,
1/23/1788:1792,
1/23/1827:1830,
1/23/1975:1979		No text annotation
homologous
J4_5J7L_025
NA
J4_7N2C_0121/23/1833:1835,
1/23/1905:1906,
1/23/1924:1933,
1/23/1967:1972		No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_7N2C_0131/23/2285:2289,
1/23/2343:2347,
1/23/2370:2372,
1/23/2381:2383		No text annotation
homologous
J4_5J7L_027
NA
J4_7N2C_0141/23/2643:2646,
1/23/2674:2676,
1/23/2731:2735,
1/23/2769:2771		No text annotation
homologous
J4_5J7L_028
NA
J4_7N2C_0151/Dt/7:10,
1/Dt/25:27,
1/Dt/43:49,
1/Dt/65:66		tRNA junction
homologous
J4_5AXM_001
J4_58311.1
J4_7N2C_0161/Pt/7:10,
1/Pt/25:27,
1/Pt/43:49,
1/Pt/65:66		tRNA junction
homologous
J4_8VU0_001
J4_58311.1
J5_7N2C_0011/16/36:39,
1/16/403:406,
1/16/436:440,
1/16/497:500,
1/16/545:548		No text annotation
homologous
J5_5J7L_001
NA
J5_7N2C_0021/16/36:39,
1/16/403:406,
1/16/436:442,
1/16/492:500,
1/16/545:548		No text annotation
homologous
J5_5J7L_002
NA
J5_7N2C_0031/16/58:61,
1/16/106:113,
1/16/314:316,
1/16/337:339,
1/16/350:354		No text annotation
homologous
J5_5J7L_003
NA
J5_7N2C_0041/23/47:54,
1/23/116:121,
1/23/130:131,
1/23/148:150,
1/23/176:178		No text annotation
homologous
J5_5J7L_013
NA
J5_7N2C_0051/23/531:533,
1/23/560:564,
1/23/577:579,
1/23/1261:1262,
1/23/2017:2018		No text annotation
homologous
J5_5J7L_014
NA
J5_7N2C_0061/23/584:589,
1/23/668:671,
1/23/809:812,
1/23/1195:1196,
1/23/1250:1256		No text annotation
homologous
J5_5J7L_015
NA
J5_7N2C_0071/23/1674:1682,
1/23/1706:1707,
1/23/1751:1752,
1/23/1756:1764,
1/23/1988:1990		No text annotation
homologous
J5_5J7L_016
NA
J5_7N2C_0081/23/2057:2064,
1/23/2446:2453,
1/23/2500:2507,
1/23/2582:2588,
1/23/2606:2611		No text annotation
J5_7N2C_0091/23/2074:2077,
1/23/2243:2246,
1/23/2258:2259,
1/23/2281:2282,
1/23/2427:2435		No text annotation
homologous
J5_4WF9_007
J5_39529.2
J6_7N2C_0011/23/45:46,
1/23/179:183,
1/23/214:224,
1/23/231:235,
1/23/262:266,
1/23/426:433		No text annotation
J6_7N2C_0021/23/2074:2077,
1/23/2243:2246,
1/23/2258:2259,
1/23/2281:2284,
1/23/2384:2395,
1/23/2421:2435		No text annotation
J7_7N2C_0011/23/8:15,
1/23/525:531,
1/23/2018:2023,
1/23/2040:2043,
1/23/2625:2630,
1/23/2788:2789,
1/23/2894:2895		No text annotation
J7_7N2C_0021/23/817:822,
1/23/835:838,
1/23/940:946,
1/23/971:976,
1/23/987:991,
1/23/1163:1164,
1/23/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_7N2C_008No text annotation
J3_7N2C_010No text annotation

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