HL_7N2V_025

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

7N2V|1|16|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N2V_025 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.072

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

7N2V|1|16|G|1089
7N2V|1|16|U|1090
7N2V|1|16|U|1091
7N2V|1|16|A|1092
7N2V|1|16|A|1093
7N2V|1|16|G|1094
7N2V|1|16|U|1095
7N2V|1|16|C|1096

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SB

30S ribosomal protein S2

Chain SG

30S ribosomal protein S7

Chain SU

30S ribosomal protein S21