HL_7N2V_060

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

7N2V|1|23|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N2V_060 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.1503

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7N2V|1|23|C|1064
7N2V|1|23|U|1065
7N2V|1|23|U|1066
7N2V|1|23|A|1067
7N2V|1|23|G|1068
7N2V|1|23|A|1069
7N2V|1|23|A|1070
7N2V|1|23|G|1071
7N2V|1|23|C|1072
7N2V|1|23|A|1073
7N2V|1|23|G|1074

Current chains

Chain 23

23S rRNA

Nearby chains

Chain EF

Elongation factor G

Chain LK

50S ribosomal protein L11