HL_7N2V_080
3D structure
- PDB id
- 7N2V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- G(PSU)AAC(3TD)AUAAC
- Length
- 11 nucleotides
- Bulged bases
- 7N2V|1|23|A|1913, 7N2V|1|23|C|1914
- QA status
- Modified nucleotides: PSU, 3TD
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7N2V_080 not in the Motif Atlas
- Homologous match to HL_9DFE_046
- Geometric discrepancy: 0.4375
- The information below is about HL_9DFE_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82185.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7N2V|1|23|G|1910
7N2V|1|23|PSU|1911
7N2V|1|23|A|1912
7N2V|1|23|A|1913
7N2V|1|23|C|1914
7N2V|1|23|3TD|1915
7N2V|1|23|A|1916
7N2V|1|23|U|1917
7N2V|1|23|A|1918
7N2V|1|23|A|1919
7N2V|1|23|C|1920
Current chains
- Chain 23
- 23S rRNA
Nearby chains
- Chain 16
- Small subunit ribosomal RNA; SSU rRNA
- Chain EF
- Elongation factor G
- Chain Pt
- Transfer RNA; tRNA
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