HL_7N2V_081

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

7N2V|1|23|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N2V_081 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0582

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7N2V|1|23|G|1949
7N2V|1|23|G|1950
7N2V|1|23|U|1951
7N2V|1|23|A|1952
7N2V|1|23|A|1953
7N2V|1|23|G|1954
7N2V|1|23|U|1955
7N2V|1|23|U|1956
7N2V|1|23|C|1957

Current chains

Chain 23

23S rRNA

Nearby chains

Chain 16

Small subunit ribosomal RNA; SSU rRNA

Chain LN

50S ribosomal protein L14