HL_7N2V_086

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

7N2V|1|23|A|2268, 7N2V|1|23|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N2V_086 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0622

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7N2V|1|23|C|2264
7N2V|1|23|U|2265
7N2V|1|23|A|2266
7N2V|1|23|A|2267
7N2V|1|23|A|2268
7N2V|1|23|G|2269
7N2V|1|23|A|2270
7N2V|1|23|G|2271
7N2V|1|23|U|2272
7N2V|1|23|A|2273
7N2V|1|23|A|2274
7N2V|1|23|C|2275
7N2V|1|23|G|2276

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LP

50S ribosomal protein L16

Chain La

50S ribosomal protein L27