HL_7N2V_098

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7N2V|1|23|G|2751, 7N2V|1|23|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N2V_098 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0628

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7N2V|1|23|C|2745
7N2V|1|23|U|2746
7N2V|1|23|G|2747
7N2V|1|23|A|2748
7N2V|1|23|A|2749
7N2V|1|23|A|2750
7N2V|1|23|G|2751
7N2V|1|23|C|2752
7N2V|1|23|A|2753
7N2V|1|23|U|2754
7N2V|1|23|C|2755
7N2V|1|23|U|2756
7N2V|1|23|A|2757
7N2V|1|23|A|2758
7N2V|1|23|G|2759

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LF

50S ribosomal protein L6

Chain Lj

50S ribosomal protein L36