HL_7N8B_006

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

7N8B|1|A1|U|210, 7N8B|1|A1|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_006 not in the Motif Atlas

Homologous match to HL_8C3A_006

Geometric discrepancy: 0.0816

The information below is about HL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7N8B|1|A1|C|208
7N8B|1|A1|A|209
7N8B|1|A1|U|210
7N8B|1|A1|A|211
7N8B|1|A1|G|212

Current chains

Chain A1

25S

Nearby chains

Chain AC

60S ribosomal protein L4-A

Chain AY

60S ribosomal protein L26-A