HL_7N8B_008

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

7N8B|1|A1|G|283, 7N8B|1|A1|A|284, 7N8B|1|A1|A|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_008 not in the Motif Atlas

Homologous match to HL_8C3A_008

Geometric discrepancy: 0.0795

The information below is about HL_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7N8B|1|A1|U|278
7N8B|1|A1|U|279
7N8B|1|A1|U|280
7N8B|1|A1|G|281
7N8B|1|A1|G|282
7N8B|1|A1|G|283
7N8B|1|A1|A|284
7N8B|1|A1|A|285
7N8B|1|A1|U|286
7N8B|1|A1|G|287

Current chains

Chain A1

25S

Nearby chains

Chain AL

60S ribosomal protein L13-A

Chain AN

60S ribosomal protein L15-A

Chain Aa

60S ribosomal protein L28

Chain Ao

60S ribosomal protein L42-A