HL_7N8B_022

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

7N8B|1|A1|C|959, 7N8B|1|A1|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_022 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1575

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7N8B|1|A1|C|958
7N8B|1|A1|C|959
7N8B|1|A1|U|960
7N8B|1|A1|C|961
7N8B|1|A1|A|962
7N8B|1|A1|G|963

Current chains

Chain A1

25S

Nearby chains

Chain Aa

60S ribosomal protein L28

Chain Ab

60S ribosomal protein L29

Chain Ao

60S ribosomal protein L42-A