HL_7N8B_024

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

7N8B|1|A1|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_024 not in the Motif Atlas

Homologous match to HL_8C3A_024

Geometric discrepancy: 0.1108

The information below is about HL_8C3A_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7N8B|1|A1|C|1076
7N8B|1|A1|U|1077
7N8B|1|A1|U|1078
7N8B|1|A1|A|1079
7N8B|1|A1|A|1080
7N8B|1|A1|U|1081
7N8B|1|A1|U|1082
7N8B|1|A1|G|1083

Current chains

Chain A1

25S

Nearby chains

Chain AD

60S ribosomal protein L5

Chain AT

60S ribosomal protein L21-A

Chain Ab

60S ribosomal protein L29