HL_7N8B_115

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

7N8B|1|A1|C|648

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_115 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0877

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7N8B|1|A1|U|640
7N8B|1|A1|C|641
7N8B|1|A1|U|642
7N8B|1|A1|U|643
7N8B|1|A1|G|644
7N8B|1|A1|1MA|645
7N8B|1|A1|A|646
7N8B|1|A1|A|647
7N8B|1|A1|C|648
7N8B|1|A1|A2M|649

Current chains

Chain A1

25S

Nearby chains

Chain AB

60S ribosomal protein L3

Chain Aa

60S ribosomal protein L28

Chain Ae

60S ribosomal protein L32