HL_7NAC_013

3D structure

PDB id

7NAC (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UGCCUCGGUA

Length

10 nucleotides

Bulged bases

7NAC|1|1|U|545, 7NAC|1|1|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NAC_013 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.317

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

7NAC|1|1|U|541
7NAC|1|1|G|542
7NAC|1|1|C|543
7NAC|1|1|C|544
7NAC|1|1|U|545
7NAC|1|1|C|546
7NAC|1|1|G|547
7NAC|1|1|G|548
7NAC|1|1|U|549
7NAC|1|1|A|550

Current chains

Chain 1

25S rRNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain S

60S ribosomal protein L20-A