7NAC Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7NAC_001 | 1/1/38:45 | No text annotation | ||
| HL_7NAC_002 | 1/1/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7NAC_003 | 1/1/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_7NAC_004 | 1/1/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_7NAC_005 | 1/1/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7NAC_006 | 1/1/208:212 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_7NAC_007 | 1/1/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_7NAC_008 | 1/1/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_7NAC_010 | 1/1/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7NAC_011 | 1/1/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_7NAC_012 | 1/1/463:468 | No text annotation | ||
| HL_7NAC_066 | 1/1/542:549 | No text annotation | ||
| HL_7NAC_014 | 1/1/599:604 | No text annotation | homologous HL_8C3A_013 NA | |
| HL_7NAC_015 | 1/1/640:649 | No text annotation | geometric HL_8C3A_015 NA | |
| HL_7NAC_016 | 1/1/686:694 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_7NAC_017 | 1/1/707:712 | GNRA | homologous HL_8C3A_016 NA | |
| HL_7NAC_018 | 1/1/732:737 | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
| HL_7NAC_020 | 1/1/844:849 | GNRA | homologous HL_8C3A_019 NA | |
| HL_7NAC_022 | 1/1/911:916 | GNRA | geometric HL_5XTM_001 HL_37824.8 | |
| HL_7NAC_023 | 1/1/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_7NAC_025 | 1/1/1126:1132 | Other HL | geometric HL_4V9F_039 HL_77436.5 | |
| HL_7NAC_026 | 1/1/1148:1155 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_7NAC_027 | 1/1/1239:1249 | No text annotation | homologous HL_8C3A_027 NA | |
| HL_7NAC_028 | 1/1/1267:1274 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
| HL_7NAC_029 | 1/1/1347:1357 | Mini UNCG | geometric HL_4OOG_001 HL_56334.1 | |
| HL_7NAC_030 | 1/1/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7NAC_031 | 1/1/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_7NAC_032 | 1/1/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_7NAC_033 | 1/1/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_7NAC_034 | 1/1/1565:1574 | No text annotation | ||
| HL_7NAC_035 | 1/1/1599:1608 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_7NAC_036 | 1/1/1634:1639 | GNRA | homologous HL_8C3A_036 NA | |
| HL_7NAC_037 | 1/1/1680:1688 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_7NAC_038 | 1/1/1719:1725 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_7NAC_039 | 1/1/1759:1766 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_7NAC_040 | 1/1/1792:1796 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_7NAC_041 | 1/1/1862:1868 | No text annotation | geometric HL_5TBW_012 NA | |
| HL_7NAC_044 | 1/1/2369:2378 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_7NAC_045 | 1/1/2470:2475 | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_7NAC_046 | 1/1/2840:2848 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
| HL_7NAC_047 | 1/1/2897:2904 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_7NAC_048 | 1/1/2918:2928 | No text annotation | geometric HL_6ORD_035 NA | |
| HL_7NAC_049 | 1/1/2963:2968 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_7NAC_050 | 1/1/3025:3030 | GNRA | homologous HL_8C3A_066 NA | |
| HL_7NAC_051 | 1/1/3068:3073 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_7NAC_052 | 1/1/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7NAC_053 | 1/1/3194:3197 | No text annotation | geometric HL_5J7L_176 HL_32346.4 | |
| HL_7NAC_054 | 1/1/3240:3247 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_7NAC_055 | 1/1/3303:3311 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_7NAC_064 | 1/2/47:56 | No text annotation | homologous HL_8P9A_186 HL_93438.2 | |
| HL_7NAC_057 | 1/2/69:89 | No text annotation | homologous HL_8C3A_230 NA | |
| HL_7NAC_058 | 1/2/108:114 | No text annotation | geometric HL_6D12_002 HL_48417.6 | |
| HL_7NAC_059 | 1/2/124:129 | No text annotation | geometric HL_5TBW_076 NA | |
| HL_7NAC_060 | 1/6/12:16 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_7NAC_061 | 1/6/37:42 | UNCG | geometric HL_6QN3_001 HL_34617.5 | |
| HL_7NAC_062 | 1/6/65:213 | No text annotation | geometric HL_5TBW_006 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7NAC_009 | UNCG variation | ||
| HL_7NAC_013 | No text annotation | ||
| HL_7NAC_019 | No text annotation | ||
| HL_7NAC_021 | Externally structured | ||
| HL_7NAC_024 | No text annotation | ||
| HL_7NAC_042 | Externally structured | ||
| HL_7NAC_043 | No text annotation | ||
| HL_7NAC_063 | No text annotation | ||
| HL_7NAC_056 | No text annotation | ||
| HL_7NAC_065 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7NAC_001 | 1/1/7:8, 1/2/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_7NAC_002 | 1/1/13:15, 1/2/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_7NAC_003 | 1/1/27:28, 1/1/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7NAC_004 | 1/1/31:38, 1/1/45:53 | tSH-tHW-tHH-tHS | geometric IL_5TBW_005 NA | |
| IL_7NAC_005 | 1/1/82:89, 1/1/97:103 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_7NAC_006 | 1/1/123:124, 1/1/144:149 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_7NAC_007 | 1/1/125:127, 1/1/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_7NAC_008 | 1/1/164:166, 1/1/256:257 | Single bulged A | geometric IL_6D3P_004 IL_31462.7 | |
| IL_7NAC_009 | 1/1/169:170, 1/1/248:253 | No text annotation | ||
| IL_7NAC_010 | 1/1/177:178, 1/1/238:241 | Minor groove platform | geometric IL_4KQY_004 IL_02555.1 | |
| IL_7NAC_011 | 1/1/189:191, 1/1/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7NAC_012 | 1/1/337:339, 1/2/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_7NAC_013 | 1/1/376:379, 1/1/390:403 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_7NAC_014 | 1/1/404:410, 1/2/13:19 | Triple sheared with non-canonical cWW | geometric IL_5TBW_015 NA | |
| IL_7NAC_015 | 1/1/429:431, 1/1/628:630 | Isolated non-canonical cWW pair | geometric IL_1YZ9_001 NA | |
| IL_7NAC_117 | 1/1/445:455, 1/1/475:489 | No text annotation | ||
| IL_7NAC_111 | 1/1/461:463, 1/1/468:469 | No text annotation | ||
| IL_7NAC_018 | 1/1/512:513, 1/1/577:579 | Single bulged A | homologous IL_8C3A_020 NA | |
| IL_7NAC_019 | 1/1/517:525, 1/1/567:573 | No text annotation | geometric IL_5TBW_019 NA | |
| IL_7NAC_020 | 1/1/531:538, 1/1/553:561 | No text annotation | geometric IL_5TBW_020 NA | |
| IL_7NAC_021 | 1/1/668:670, 1/1/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_7NAC_022 | 1/1/680:684, 1/1/696:700 | No text annotation | homologous IL_8C3A_024 NA | |
| IL_7NAC_023 | 1/1/725:728, 1/1/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_7NAC_024 | 1/1/752:753, 1/1/779:781 | Single bulged A | geometric IL_3MJA_001 NA | |
| IL_7NAC_118 | 1/1/752:757, 1/1/774:781 | No text annotation | ||
| IL_7NAC_025 | 1/1/754:758, 1/1/773:778 | No text annotation | ||
| IL_7NAC_026 | 1/1/803:805, 1/1/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_7NAC_027 | 1/1/805:809, 1/1/931:938 | No text annotation | ||
| IL_7NAC_028 | 1/1/833:838, 1/1/855:861 | Quadruple sheared | geometric IL_3FTF_001 IL_06136.2 | |
| IL_7NAC_029 | 1/1/969:970, 1/1/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_7NAC_030 | 1/1/977:982, 1/1/1101:1104 | No text annotation | ||
| IL_7NAC_031 | 1/1/983:985, 1/1/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_7NAC_033 | 1/1/1120:1122, 1/1/1136:1138 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_7NAC_034 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_7NAC_035 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_7NAC_036 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U | geometric IL_5TBW_050 NA | |
| IL_7NAC_037 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_7NAC_038 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation | ||
| IL_7NAC_039 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_7NAC_040 | 1/1/1218:1226, 1/1/1283:1287 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_7NAC_113 | 1/1/1233:1238, 1/1/1250:1255 | No text annotation | ||
| IL_7NAC_041 | 1/1/1234:1238, 1/1/1250:1254 | No text annotation | homologous IL_8C3A_058 NA | |
| IL_7NAC_042 | 1/1/1262:1266, 1/1/1275:1277 | Major groove platform with extra cWW | geometric IL_1MMS_002 IL_51387.3 | |
| IL_7NAC_043 | 1/1/1376:1378, 1/1/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7NAC_044 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_7NAC_045 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_7NAC_046 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A | geometric IL_4V9F_002 IL_31462.7 | |
| IL_7NAC_047 | 1/1/1444:1450, 1/1/2354:2359 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_7NAC_049 | 1/1/1501:1505, 1/1/1513:1515 | C-loop | geometric IL_7RQB_104 NA | |
| IL_7NAC_050 | 1/1/1532:1536, 1/1/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_7NAC_051 | 1/1/1618:1621, 1/1/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_7NAC_052 | 1/1/1623:1624, 1/1/1820:1822 | Single bulged U | geometric IL_6UFG_004 IL_89505.4 | |
| IL_7NAC_053 | 1/1/1625:1631, 1/1/1811:1819 | No text annotation | ||
| IL_7NAC_054 | 1/1/1645:1649, 1/1/1806:1810 | Triple sheared | homologous IL_8C3A_073 NA | |
| IL_7NAC_055 | 1/1/1661:1663, 1/1/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_7NAC_056 | 1/1/1669:1670, 1/1/1778:1780 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_7NAC_057 | 1/1/1670:1671, 1/1/1776:1778 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_7NAC_058 | 1/1/1694:1698, 1/1/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_7NAC_059 | 1/1/1702:1707, 1/1/1737:1743 | No text annotation | homologous IL_8C3A_078 NA | |
| IL_7NAC_060 | 1/1/1711:1717, 1/1/1727:1733 | No text annotation | homologous IL_8C3A_079 NA | |
| IL_7NAC_061 | 1/1/1883:1889, 1/1/2346:2349 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_7NAC_062 | 1/1/1895:1897, 1/1/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_7NAC_063 | 1/1/1898:1901, 1/1/2336:2337 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_7NAC_064 | 1/1/1921:1923, 1/1/2110:2112 | Isolated non-canonical cWW pair | geometric IL_3DIL_006 IL_87907.2 | |
| IL_7NAC_065 | 1/1/1923:1925, 1/1/2106:2110 | No text annotation | ||
| IL_7NAC_114 | 1/1/1926:1948, 1/1/2098:2105 | No text annotation | ||
| IL_7NAC_066 | 1/1/1952:1954, 1/1/2087:2094 | No text annotation | ||
| IL_7NAC_068 | 1/1/1965:1968, 1/1/2054:2057 | Tandem non-canonical cWW pairs | geometric IL_4V88_391 NA | |
| IL_7NAC_069 | 1/1/2128:2129, 1/1/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_7NAC_070 | 1/1/2391:2394, 1/1/2986:2988 | No text annotation | ||
| IL_7NAC_071 | 1/1/2410:2412, 1/1/2809:2811 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_87907.2 | |
| IL_7NAC_072 | 1/1/2412:2413, 1/1/2807:2809 | Single bulged A | geometric IL_4V88_409 NA | |
| IL_7NAC_074 | 1/1/2423:2425, 1/1/2604:2607 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_7NAC_075 | 1/1/2444:2445, 1/1/2501:2503 | Minor groove platform | geometric IL_4R4V_001 IL_51454.3 | |
| IL_7NAC_115 | 1/1/2444:2447, 1/1/2499:2503 | No text annotation | ||
| IL_7NAC_076 | 1/1/2449:2451, 1/1/2496:2497 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_7NAC_077 | 1/1/2452:2463, 1/1/2492:2495 | No text annotation | ||
| IL_7NAC_078 | 1/1/2466:2469, 1/1/2476:2489 | No text annotation | geometric IL_3U4M_003 IL_75283.2 | |
| IL_7NAC_079 | 1/1/2835:2839, 1/1/2849:2853 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_7NAC_080 | 1/1/2879:2882, 1/1/2940:2947 | No text annotation | ||
| IL_7NAC_081 | 1/1/2889:2891, 1/1/2912:2914 | Isolated non-canonical cWW pair | homologous IL_8C3A_118 NA | |
| IL_7NAC_116 | 1/1/2889:2892, 1/1/2909:2914 | No text annotation | homologous IL_8P9A_338 IL_07469.2 | |
| IL_7NAC_082 | 1/1/2891:2892, 1/1/2909:2912 | Major groove platform with intercalation | geometric IL_4V9F_089 IL_02555.1 | |
| IL_7NAC_083 | 1/1/2959:2961, 1/1/2970:2973 | No text annotation | homologous IL_8C3A_121 NA | |
| IL_7NAC_084 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_7NAC_085 | 1/1/3012:3015, 1/1/3039:3042 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_77658.1 | |
| IL_7NAC_086 | 1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_7NAC_087 | 1/1/3047:3051, 1/1/3091:3094 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_7NAC_088 | 1/1/3054:3059, 1/1/3084:3088 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_7NAC_089 | 1/1/3063:3064, 1/1/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_7NAC_090 | 1/1/3103:3107, 1/1/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_7NAC_091 | 1/1/3164:3166, 1/1/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_7NAC_119 | 1/1/3168:3170, 1/1/3280:3282 | Isolated non-canonical cWW pair | homologous IL_8P9A_350 IL_28037.2 | |
| IL_7NAC_093 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_7NAC_094 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation | geometric IL_5TBW_124 NA | |
| IL_7NAC_095 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_7NAC_096 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_7NAC_097 | 1/1/3233:3235, 1/1/3252:3254 | Isolated non-canonical cWW pair | geometric IL_5TBW_127 NA | |
| IL_7NAC_098 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs | geometric IL_4UYK_003 IL_77658.1 | |
| IL_7NAC_099 | 1/1/3300:3303, 1/1/3311:3314 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_7NAC_100 | 1/1/3318:3320, 1/1/3387:3388 | Single bulged U | geometric IL_5TBW_130 NA | |
| IL_7NAC_101 | 1/1/3324:3325, 1/1/3381:3383 | Single bulged U | homologous IL_8C3A_137 NA | |
| IL_7NAC_102 | 1/1/3328:3330, 1/1/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_7NAC_103 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_7NAC_104 | 1/1/3340:3345, 1/1/3360:3364 | No text annotation | ||
| IL_7NAC_105 | 1/2/44:64, 1/2/96:100 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_7NAC_106 | 1/2/64:66, 1/2/93:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_7NAC_107 | 1/2/68:69, 1/2/89:91 | Single bulged U | geometric IL_5TBW_146 NA | |
| IL_7NAC_108 | 1/6/26:27, 1/6/51:54 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_7NAC_109 | 1/6/30:34, 1/6/45:48 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7NAC_110 | No text annotation | ||
| IL_7NAC_016 | Isolated cWS basepair | ||
| IL_7NAC_017 | No text annotation | ||
| IL_7NAC_112 | No text annotation | ||
| IL_7NAC_032 | Single bulged G | ||
| IL_7NAC_048 | No text annotation | ||
| IL_7NAC_067 | No text annotation | ||
| IL_7NAC_073 | No text annotation | ||
| IL_7NAC_092 | Tandem non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7NAC_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation | homologous J3_8P9A_042 J3_19664.1 | |
| J3_7NAC_011 | 1/1/113:124, 1/1/144:158, 1/1/263:267 | No text annotation | ||
| J3_7NAC_012 | 1/1/185:189, 1/1/205:214, 1/1/226:231 | No text annotation | homologous J3_8P9A_044 J3_75408.1 | |
| J3_7NAC_013 | 1/1/340:356, 1/1/363:368, 1/2/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_7NAC_002 | 1/1/369:376, 1/1/403:404, 1/2/19:20 | No text annotation | geometric J3_5TBW_002 NA | |
| J3_7NAC_014 | 1/1/369:379, 1/1/390:404, 1/2/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_7NAC_015 | 1/1/435:441, 1/1/493:495, 1/1/618:624 | No text annotation | ||
| J3_7NAC_004 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation | homologous J3_8P9A_048 J3_83726.1 | |
| J3_7NAC_005 | 1/1/1230:1232, 1/1/1256:1262, 1/1/1277:1279 | No text annotation | homologous J3_8C3A_005 NA | |
| J3_7NAC_006 | 1/1/1479:1485, 1/1/1857:1859, 1/1/1871:1874 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_7NAC_007 | 1/1/1526:1531, 1/1/1591:1595, 1/1/1612:1613 | No text annotation | homologous J3_8P9A_055 J3_31965.2 | |
| J3_7NAC_017 | 1/1/1537:1542, 1/1/1551:1560, 1/1/1579:1584 | No text annotation | ||
| J3_7NAC_008 | 1/1/1631:1632, 1/1/1641:1645, 1/1/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_7NAC_018 | 1/1/1654:1658, 1/1/1791:1792, 1/1/1796:1801 | No text annotation | homologous J3_8C3A_055 NA | |
| J3_7NAC_009 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_7NAC_019 | 1/1/3171:3176, 1/1/3212:3220, 1/1/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_7NAC_010 | 1/1/3298:3300, 1/1/3314:3318, 1/1/3388:3390 | No text annotation | homologous J3_8P9A_065 J3_81015.1 | |
| J3_7NAC_020 | 1/2/44:45, 1/2/58:64, 1/2/96:100 | No text annotation | homologous J3_8C3A_060 NA | |
| J4_7NAC_001 | 1/1/112:113, 1/1/267:272, 1/1/293:299, 1/1/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_7NAC_002 | 1/1/185:189, 1/1/205:208, 1/1/212:214, 1/1/226:231 | No text annotation | homologous J4_8P9A_013 J4_12410.1 | |
| J4_7NAC_003 | 1/1/1451:1457, 1/1/1475:1476, 1/1/1877:1880, 1/1/2352:2353 | No text annotation | ||
| J4_7NAC_004 | 1/1/1492:1496, 1/1/1520:1525, 1/1/1614:1615, 1/1/1829:1836 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_7NAC_005 | 1/1/1674:1675, 1/1/1693:1694, 1/1/1752:1753, 1/1/1772:1773 | No text annotation | homologous J4_8C3A_005 NA | |
| J4_7NAC_006 | 1/1/3010:3012, 1/1/3042:3043, 1/1/3098:3100, 1/1/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_65356.1 | |
| J5_7NAC_001 | 1/1/20:22, 1/2/35:42, 1/2/102:107, 1/2/115:116, 1/2/137:139 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
| J5_7NAC_002 | 1/1/658:663, 1/1/799:802, 1/1/941:944, 1/1/1375:1376, 1/1/1431:1437 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
| J5_7NAC_003 | 1/1/675:678, 1/1/702:706, 1/1/713:721, 1/1/749:751, 1/1/782:787 | No text annotation | homologous J5_8P9A_012 J5_23272.1 | |
| J6_7NAC_001 | 1/1/22:27, 1/1/58:68, 1/1/75:79, 1/1/106:110, 1/1/321:331, 1/2/32:35 | No text annotation | ||
| J7_7NAC_001 | 1/1/949:956, 1/1/965:968, 1/1/1114:1117, 1/1/1141:1146, 1/1/1157:1161, 1/1/1338:1339, 1/1/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7NAC_003 | No text annotation | ||
| J3_7NAC_016 | No text annotation |
Coloring options: