HL_7NAC_046

3D structure

PDB id

7NAC (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

7NAC|1|1|U|2842, 7NAC|1|1|A|2845, 7NAC|1|1|U|2846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NAC_046 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3051

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

7NAC|1|1|C|2840
7NAC|1|1|G|2841
7NAC|1|1|U|2842
7NAC|1|1|U|2843
7NAC|1|1|C|2844
7NAC|1|1|A|2845
7NAC|1|1|U|2846
7NAC|1|1|A|2847
7NAC|1|1|G|2848

Current chains

Chain 1

25S rRNA

Nearby chains

Chain J

rRNA-processing protein EBP2