HL_7NAC_056

3D structure

PDB id

7NAC (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UAGCCGUUA

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NAC_056 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3129

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7NAC|1|1|U|3346
7NAC|1|1|A|3347
7NAC|1|1|G|3348
7NAC|1|1|C|3349
7NAC|1|1|C|3350
7NAC|1|1|G|3356
7NAC|1|1|U|3357
7NAC|1|1|U|3358
7NAC|1|1|A|3359

Current chains

Chain 1

25S rRNA

Nearby chains

Chain x

ATP-dependent rRNA helicase SPB4