HL_7NAV_034

3D structure

PDB id

7NAV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (Consensus refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GCGAAGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NAV_034 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.3246

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

7NAV|1|A|G|725
7NAV|1|A|C|726
7NAV|1|A|G|727
7NAV|1|A|A|728
7NAV|1|A|A|729
7NAV|1|A|G|730
7NAV|1|A|G|731
7NAV|1|A|C|732

Current chains

Chain A

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S15

Chain R

30S ribosomal protein S18