HL_7NBU_063

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

ACGCUUAUGCGU

Length

12 nucleotides

Bulged bases

7NBU|1|a|U|1176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NBU_063 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.14

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7NBU|1|a|A|1169
7NBU|1|a|C|1170
7NBU|1|a|G|1171
7NBU|1|a|C|1172
7NBU|1|a|U|1173
7NBU|1|a|U|1174
7NBU|1|a|A|1175
7NBU|1|a|U|1176
7NBU|1|a|G|1177
7NBU|1|a|C|1178
7NBU|1|a|G|1179
7NBU|1|a|U|1180

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L15