HL_7NBU_087

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

7NBU|1|a|A|2268, 7NBU|1|a|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NBU_087 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0808

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7NBU|1|a|C|2264
7NBU|1|a|U|2265
7NBU|1|a|A|2266
7NBU|1|a|A|2267
7NBU|1|a|A|2268
7NBU|1|a|G|2269
7NBU|1|a|A|2270
7NBU|1|a|G|2271
7NBU|1|a|U|2272
7NBU|1|a|A|2273
7NBU|1|a|A|2274
7NBU|1|a|C|2275
7NBU|1|a|G|2276

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L16

Chain v

50S ribosomal protein L27