HL_7NFX_019

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

7NFX|1|5|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NFX_019 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1053

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7NFX|1|5|U|1317
7NFX|1|5|C|1318
7NFX|1|5|U|1319
7NFX|1|5|U|1320
7NFX|1|5|G|1321
7NFX|1|5|A|1322
7NFX|1|5|A|1323
7NFX|1|5|A|1324
7NFX|1|5|C|1325
7NFX|1|5|A|1326

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain a

uL15

Chain e

eL32