HL_7NFX_022

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCGCUC

Length

6 nucleotides

Bulged bases

7NFX|1|5|G|1408, 7NFX|1|5|U|1410

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NFX_022 not in the Motif Atlas

Geometric match to HL_5T16_002

Geometric discrepancy: 0.3602

The information below is about HL_5T16_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

7NFX|1|5|G|1406
7NFX|1|5|C|1407
7NFX|1|5|G|1408
7NFX|1|5|C|1409
7NFX|1|5|U|1410
7NFX|1|5|C|1411

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain b

60S ribosomal protein L29