HL_7NFX_028

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

7NFX|1|5|C|1676, 7NFX|1|5|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NFX_028 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1517

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7NFX|1|5|C|1675
7NFX|1|5|C|1676
7NFX|1|5|U|1677
7NFX|1|5|C|1678
7NFX|1|5|A|1679
7NFX|1|5|G|1680

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain a

uL15

Chain b

60S ribosomal protein L29

Chain o

eL42