HL_7NFX_048

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

7NFX|1|5|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NFX_048 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.1754

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7NFX|1|5|U|2810
7NFX|1|5|G|2811
7NFX|1|5|A|2812
7NFX|1|5|A|2813
7NFX|1|5|C|2814
7NFX|1|5|A|2815
7NFX|1|5|G|2816

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

60S RIBOSOMAL PROTEIN EL19