HL_7NHK_013

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7NHK|1|A|G|450

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHK_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1071

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7NHK|1|A|G|449
7NHK|1|A|G|450
7NHK|1|A|A|451
7NHK|1|A|C|452
7NHK|1|A|C|453
7NHK|1|A|A|454
7NHK|1|A|U|455
7NHK|1|A|C|456

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L15