HL_7NHK_049

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

7NHK|1|A|U|1968

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHK_049 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0842

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7NHK|1|A|G|1962
7NHK|1|A|G|1963
7NHK|1|A|U|1964
7NHK|1|A|A|1965
7NHK|1|A|A|1966
7NHK|1|A|G|1967
7NHK|1|A|U|1968
7NHK|1|A|U|1969
7NHK|1|A|C|1970

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L14

Chain a

Small subunit ribosomal RNA; SSU rRNA