HL_7NHK_050

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

7NHK|1|A|A|2043, 7NHK|1|A|A|2044, 7NHK|1|A|G|2045

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHK_050 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.1458

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

7NHK|1|A|G|2040
7NHK|1|A|U|2041
7NHK|1|A|G|2042
7NHK|1|A|A|2043
7NHK|1|A|A|2044
7NHK|1|A|G|2045
7NHK|1|A|A|2046
7NHK|1|A|U|2047
7NHK|1|A|G|2048
7NHK|1|A|C|2049

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L32

Chain H

50S ribosomal protein L3