HL_7NHK_052

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAUCG

Length

7 nucleotides

Bulged bases

7NHK|1|A|A|2224, 7NHK|1|A|U|2226

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHK_052 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.1827

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

7NHK|1|A|C|2222
7NHK|1|A|U|2223
7NHK|1|A|A|2224
7NHK|1|A|A|2225
7NHK|1|A|U|2226
7NHK|1|A|C|2227
7NHK|1|A|G|2228

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2

Chain Z

50S ribosomal protein L28