HL_7NHK_079

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

7NHK|1|a|G|292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHK_079 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1464

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7NHK|1|a|G|285
7NHK|1|a|G|286
7NHK|1|a|U|287
7NHK|1|a|A|288
7NHK|1|a|A|289
7NHK|1|a|C|290
7NHK|1|a|G|291
7NHK|1|a|G|292
7NHK|1|a|C|293

Current chains

Chain a

16S rRNA

Nearby chains

Chain r

30S ribosomal protein S17

Chain u

30S ribosomal protein S20