HL_7NHK_097

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

7NHK|1|a|G|1121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHK_097 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1352

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

7NHK|1|a|G|1116
7NHK|1|a|U|1117
7NHK|1|a|U|1118
7NHK|1|a|A|1119
7NHK|1|a|A|1120
7NHK|1|a|G|1121
7NHK|1|a|U|1122
7NHK|1|a|C|1123

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S2

Chain h

30S ribosomal protein S7