HL_7NHL_012

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAAUAAUC

Length

9 nucleotides

Bulged bases

7NHL|1|A|A|372, 7NHL|1|A|A|373, 7NHL|1|A|U|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.113

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7NHL|1|A|G|370
7NHL|1|A|U|371
7NHL|1|A|A|372
7NHL|1|A|A|373
7NHL|1|A|U|374
7NHL|1|A|A|375
7NHL|1|A|A|376
7NHL|1|A|U|377
7NHL|1|A|C|378

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain X

50S ribosomal protein L24