HL_7NHL_013

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCACGUGAAAUU

Length

13 nucleotides

Bulged bases

7NHL|1|A|G|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_013 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.1723

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7NHL|1|A|A|427
7NHL|1|A|G|428
7NHL|1|A|C|429
7NHL|1|A|A|430
7NHL|1|A|C|431
7NHL|1|A|G|432
7NHL|1|A|U|433
7NHL|1|A|G|434
7NHL|1|A|A|435
7NHL|1|A|A|436
7NHL|1|A|A|437
7NHL|1|A|U|438
7NHL|1|A|U|439

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28