HL_7NHL_027

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUAAGG

Length

8 nucleotides

Bulged bases

7NHL|1|A|U|1002, 7NHL|1|A|G|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_027 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1172

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

7NHL|1|A|U|999
7NHL|1|A|G|1000
7NHL|1|A|A|1001
7NHL|1|A|U|1002
7NHL|1|A|A|1003
7NHL|1|A|A|1004
7NHL|1|A|G|1005
7NHL|1|A|G|1006

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain P

50S ribosomal protein L16