HL_7NHL_030

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_030 not in the Motif Atlas

Geometric match to HL_6PRV_002

Geometric discrepancy: 0.2973

The information below is about HL_6PRV_002

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7NHL|1|A|C|1136
7NHL|1|A|G|1137
7NHL|1|A|U|1138
7NHL|1|A|A|1139
7NHL|1|A|A|1140
7NHL|1|A|U|1141
7NHL|1|A|A|1142
7NHL|1|A|G|1143

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain K

50S ribosomal protein L6